Description Usage Arguments Value
Function to combine records into single atlas
1 | build_atlas(matrix_fns = NULL, genes_fn, matrix_objs = NULL, output_fn = NULL)
|
matrix_fns |
character vector of paths to study matrices stored as .rds files. If a named character vector, then the name will be added as a suffix to the cell type name in the final matrix. If it is not named, then the filename will be used (without .rds) |
genes_fn |
text file with a single column containing genes and the ordering desired in the output matrix |
matrix_objs |
Checks to see whether .rds files will be read or R objects in a local environment. A list of environmental objects can be passed to matrx_objs, and that names will be used, otherwise defaults to numbers |
output_fn |
output filename for .rds file. If NULL the matrix will be returned instead of saving |
Combined matrix with all genes given
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