gene_pct_markerm: pct of cells in every cluster that express a series of...

In clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters

Description

pct of cells in every cluster that express a series of genelists

Usage

gene_pct_markerm(matrix, marker_m, metadata, cluster_col = NULL, norm = NULL)

Arguments

matrix	expression matrix
marker_m	matrixized markers
metadata	data.frame or vector containing cluster assignments per cell. Order must match column order in supplied matrix. If a data.frame provide the cluster_col parameters.
cluster_col	column in metadata with cluster number
norm	whether and how the results are normalized

Value

matrix of numeric values, clusters from mat as row names, cell types from marker_m as column names

Examples

gene_pct_markerm(
    matrix = pbmc_matrix_small,
    marker_m = cbmc_m,
    metadata = pbmc_meta,
    cluster_col = "classified"
)

clustifyr documentation built on Nov. 8, 2020, 5:32 p.m.