object_data: Function to access object data

In clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters

Description

Function to access object data

Usage

object_data(object, ...)

## S3 method for class 'seurat'
object_data(object, slot, ...)

## S3 method for class 'Seurat'
object_data(object, slot, ...)

## S3 method for class 'SingleCellExperiment'
object_data(object, slot, ...)

Arguments

object	object after tsne or umap projections and clustering
...	additional arguments
slot	data to access

Value

expression matrix, with genes as row names, and cell types as column names

Examples

mat <- object_data(
    object = s_small,
    slot = "data"
)
mat[1:3, 1:3]
mat <- object_data(
    object = s_small3,
    slot = "data"
)
mat[1:3, 1:3]
mat <- object_data(
    object = sce_small,
    slot = "data"
)
mat[1:3, 1:3]

clustifyr documentation built on Nov. 8, 2020, 5:32 p.m.