GeneSetResultCollection-class: Class '"GeneSetResultCollection"'

In cpvSNP: Gene set analysis methods for SNP association p-values that lie in genes in given gene sets

Description

Objects of this class store results from running gene set methods such as GLOSSI or VEGAS. GeneSetResultCollection objects contain a list of GeneSetResult objects (one result for each GeneSet)

Objects from the Class

Objects can be created by calls of glossi or vegas.

Methods

No methods defined with class "GeneSetResultCollection" in the signature.

Accessors

In the code snippets below, object is a GeneSetResultCollection object.

geneSetName(object):

A list of the names of the gene sets.

pValue(object):

A list of numeric p-values.

degreesOfFreedom(object):

List of integer values of the degrees of freedom used in the statistical tests performed on each gene set.

statistic(object):

A list of numeric values corresponding to the statistics calculated from the tests performed on each gene set.

Author(s)

Caitlin McHugh

See Also

GeneSetResult, GLOSSIResultCollection

Examples

showClass("GeneSetResultCollection")

cpvSNP documentation built on Nov. 8, 2020, 6 p.m.