simulatedStats-method: ~~ Methods for Function 'simulatedStats' ~~
In cpvSNP: Gene set analysis methods for SNP association p-values that lie in genes in given gene sets
Description
Usage
Arguments
Methods
Value
Author(s)
See Also
Examples
Description
This function returns the simulated statistics for a specified GeneSet
or a list of simulated statistics for a GeneSetCollection.
Usage
1
simulatedStats(object)
Arguments
object
An object of type VEGASResult or
VEGASResultCollection
Methods
Defined methods include:
-
signature(object = "VEGASResult")
-
Returns the simulated statistics for a specified VEGASResult object
-
signature(object = "VEGASResultCollection")
-
Returns a list of simulated statistics for a VEGASResultCollection object (1 for each set)
Value
Returns decimal values of simulated statistics from a VEGAS function call or a list of simulated statistics from a VEGAS function call on a gene set collection.
Author(s)
Caitlin McHugh
See Also
VEGASResult-class, observedStat
Examples
1
2
3
4
## Not run:
simulatedStats( vegas(geneSet, assoc_table, ldMatrix) )
## End(Not run)
cpvSNP documentation built on Nov. 8, 2020, 6 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Methods Value Author(s) See Also Examples
Description
This function returns the simulated statistics for a specified GeneSet
or a list of simulated statistics for a GeneSetCollection.
Usage
1 | simulatedStats(object)
|
Arguments
object |
An object of type |
Methods
Defined methods include:
-
signature(object = "VEGASResult") -
Returns the simulated statistics for a specified
VEGASResultobject -
signature(object = "VEGASResultCollection") -
Returns a list of simulated statistics for a
VEGASResultCollectionobject (1 for each set)
Value
Returns decimal values of simulated statistics from a VEGAS function call or a list of simulated statistics from a VEGAS function call on a gene set collection.
Author(s)
Caitlin McHugh
See Also
VEGASResult-class, observedStat
Examples
1 2 3 4 | ## Not run:
simulatedStats( vegas(geneSet, assoc_table, ldMatrix) )
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.