degreesOfFreedom-method: ~~ Methods for Function 'degreesOfFreedom' ~~

In cpvSNP: Gene set analysis methods for SNP association p-values that lie in genes in given gene sets

Description

This function returns the degrees of freedom used to calculate p-values from the corresponding GeneSet or a list of degrees of freedom for a GeneSetCollection.

Usage

degreesOfFreedom(object)

Arguments

object

An object of type GeneSetResult, VEGASResult, GLOSSIResult, GeneSetResultCollection, VEGASResultCollection, or GLOSSIResultCollection

Methods

Defined methods include:

signature(object = "GeneSetResult")

Returns the degrees of freedom for a GeneSetResult object

signature(object = "VEGASResult")

Returns the degrees of freedom for a VEGASResult object

signature(object = "GLOSSIResult")

Returns the degrees of freedom for a GLOSSIResult object

signature(object = "GeneSetResultCollection")

Returns a list of degrees of freedom for a GeneSetResultCollection objects (1 for each set)

signature(object = "VEGASResultCollection")

Returns a list of degrees of freedom for a VEGASResultCollection objects (1 for each set)

signature(object = "GLOSSIResultCollection")

Returns a list of degrees of freedom for a GLOSSIResultCollection objects (1 for each set)

Value

Returns an integer or a list of integers indicating the degrees of freedom in the corresponding object.

Author(s)

Caitlin McHugh

See Also

VEGASResult-class, pValue

Examples

	## Not run: 
	degreesOfFreedom( vegas(geneSet, assoc_table, ldMatrix) ) 
	
## End(Not run)

cpvSNP documentation built on Nov. 8, 2020, 6 p.m.