Calculates the pvalue representing the association of the set with the phenotype of interest, assuming all items in the set are independent, using the GLOSSI method.
1  glossi(pvals, snp.gsc)

pvals 
A numerical vector of pvalues with names
corresponding to elements listed in the 
snp.gsc 
An object of class 
This function calculates a pvalue for sets of SNPs that reside within a gene set collection. We calculate the chi square pvalues and statistic by applying Fisher's transformation to the observed pvalues.
An object with the corresponding GLOSSI results. If
snp.gsc is a GeneSetCollection
(i.e., multiple sets of
interest), then the corresponding GLOSSIResultCollection
is returned. If snp.gsc is a GeneSet
, a GLOSSIResult
object will be returned.
Jason Hackney, Jessica Larson, Caitlin McHugh mchughc@uw.edu
Chai, HighSeng and Sicotte, Hughes et al. GLOSSI: a method to assess the association of genetic locisets with complex diseases. BMC Bioinformatics, 2009.
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