VEGASResult-class: Class '"VEGASResult"'

In cpvSNP: Gene set analysis methods for SNP association p-values that lie in genes in given gene sets

Description

Objects of this class store results from running VEGAS.

Objects from the Class

Objects can be created by calls of vegas.

Slots

geneSetName:

Object of class "character", the name of the geneSet

pValue:

Object of class "numeric", the p-value

degreesOfFreedom:

Object of class "integer", the degrees of freedom used to calculate the p-value

statistic:

Object of class "numeric", the test statistic for the set

simulatedStats:

Object of class "vector", the simulated statistics for the set used to calculate the p-value

Methods

No methods defined with class "VEGASResult" in the signature.

Accessors

In the code snippets below, object is a VEGASResult object.

geneSetName(object):

The name of the gene set.

pValue(object):

A numeric p-value.

degreesOfFreedom(object):

Integer value of the degrees of freedom used in the statistical test.

statistic(object):

A numeric value corresponding to the statistic calculated from the test performed.

Author(s)

Caitlin McHugh

See Also

VEGASResultCollection, GLOSSIResult

Examples

showClass("VEGASResult")

cpvSNP documentation built on Nov. 8, 2020, 6 p.m.