derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package: (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.

Package details

AuthorLeonardo Collado-Torres [aut, cre], Alyssa C. Frazee [ctb], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]
Bioconductor views ChIPSeq DifferentialExpression DifferentialPeakCalling RNASeq Sequencing Software
MaintainerLeonardo Collado-Torres <[email protected]>
Package repositoryView on Bioconductor
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derfinder documentation built on Nov. 1, 2018, 2:20 a.m.