This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package: (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.
|Author||Leonardo Collado-Torres [aut, cre] (<https://orcid.org/0000-0003-2140-308X>), Alyssa C. Frazee [ctb], Andrew E. Jaffe [aut] (<https://orcid.org/0000-0001-6886-1454>), Jeffrey T. Leek [aut, ths] (<https://orcid.org/0000-0002-2873-2671>)|
|Bioconductor views||ChIPSeq Coverage DifferentialExpression DifferentialPeakCalling ImmunoOncology RNASeq Sequencing Software|
|Maintainer||Leonardo Collado-Torres <firstname.lastname@example.org>|
|Package repository||View on Bioconductor|
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