API for derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
| Global functions | |
|---|---|
| .REDUCER | Source code |
| .advanced_argument | Source code |
| .bamMAPPER | Source code |
| .calcFstatCutoff | Source code |
| .calcPval | Source code |
| .calcQuantile | Source code |
| .calculateFWER | Source code |
| .clusterMakerRle | Source code |
| .coverageToExonStrandStep | Source code |
| .getSegmentsRle | Source code |
| .loadCoverageBAM | Source code |
| .loadCoverageBigWig | Source code |
| .load_fullCov | Source code |
| .railMatChrRegion | Source code |
| .railMatChrRegionCov | Source code |
| .railMatrixChr | Source code |
| .regionMatrixByChr | Source code |
| .runFunFormal | Source code |
| .sampleCorradaAdj | Source code |
| .selectBestGuess | Source code |
| .smoothFstatsFun | Source code |
| .smootherFstats | Source code |
| .writeRegs | Source code |
| advancedArg | Man page Source code |
| analyzeChr | Man page Source code |
| annotateRegions | Man page Source code |
| calculatePvalues | Man page Source code |
| calculateStats | Man page Source code |
| coerceGR | Man page Source code |
| collapseFullCoverage | Man page Source code |
| coverageToExon | Man page Source code |
| createBw | Man page Source code |
| createBwSample | Man page Source code |
| define_cluster | Man page Source code |
| derfinder | Man page |
| derfinder-deprecated | Man page |
| derfinder-package | Man page |
| extendedMapSeqlevels | Man page Source code |
| filterData | Man page Source code |
| findRegions | Man page Source code |
| fullCoverage | Man page Source code |
| genomeData | Man page |
| genomeDataRaw | Man page |
| genomeFstats | Man page |
| genomeInfo | Man page |
| genomeRegions | Man page |
| genomicState | Man page |
| getRegionCoverage | Man page Source code |
| getTotalMapped | Man page Source code |
| loadCoverage | Man page Source code |
| makeGenomicState | Man page Source code |
| makeModels | Man page Source code |
| mergeResults | Man page Source code |
| preprocessCoverage | Man page Source code |
| railMatrix | Man page Source code |
| rawFiles | Man page Source code |
| regionMatrix | Man page Source code |
| sampleDepth | Man page Source code |
