API for derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

Global functions
REDUCER Source code
advancedArg Man page Source code
advanced_argument Source code
analyzeChr Man page Source code
annotateRegions Man page Source code
bamMAPPER Source code
calcFstatCutoff Source code
calcPval Source code
calcQuantile Source code
calculateFWER Source code
calculatePvalues Man page Source code
calculateStats Man page Source code
clusterMakerRle Source code
coerceGR Man page Source code
collapseFullCoverage Man page Source code
coverageToExon Man page Source code
coverageToExonStrandStep Source code
createBw Man page Source code
createBwSample Man page Source code
define_cluster Man page Source code
derfinder-deprecated Man page
derfinder-package Man page
extendedMapSeqlevels Man page Source code
filterData Man page Source code
findRegions Man page Source code
fullCoverage Man page Source code
genomeData Man page
genomeDataRaw Man page
genomeFstats Man page
genomeInfo Man page
genomeRegions Man page
genomicState Man page
getRegionCoverage Man page Source code
getSegmentsRle Source code
getTotalMapped Man page Source code
loadCoverage Man page Source code
loadCoverageBAM Source code
loadCoverageBigWig Source code
load_fullCov Source code
makeGenomicState Man page Source code
makeModels Man page Source code
mergeResults Man page Source code
preprocessCoverage Man page Source code
railMatChrRegion Source code
railMatChrRegionCov Source code
railMatrix Man page Source code
railMatrixChr Source code
rawFiles Man page Source code
regionMatrix Man page Source code
regionMatrixByChr Source code
runFunFormal Source code
sampleCorradaAdj Source code
sampleDepth Man page Source code
selectBestGuess Source code
smoothFstatsFun Source code
smootherFstats Source code
writeRegs Source code
derfinder documentation built on Nov. 17, 2017, 1:43 p.m.