Candidate Differentially Expressed Regions (DERs) for the example data. For more information check calculatePvalues.

A list with four components.

- regions
a GRanges object with the candidate DERs.

- nullStats
a numeric Rle with the mean F-statistics for the null DERs found from the permutations.

- nullWidths
an integer Rle with the width of each null candidate DER.

- nullPermutation
an integer Rle with the permutation number for each candidate DER. It identifies which permutation cycle created the null candidate DER.

calculatePvalues

derfinder documentation built on Jan. 22, 2018, 2 a.m.

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