genomeRegions: Candidate DERs for example data

In derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

Description

Candidate Differentially Expressed Regions (DERs) for the example data. For more information check calculatePvalues.

Format

A list with four components.

regions

a GRanges object with the candidate DERs.

nullStats

a numeric Rle with the mean F-statistics for the null DERs found from the permutations.

nullWidths

an integer Rle with the width of each null candidate DER.

nullPermutation

an integer Rle with the permutation number for each candidate DER. It identifies which permutation cycle created the null candidate DER.

See Also

calculatePvalues

derfinder documentation built on Dec. 20, 2020, 2 a.m.