derfinder-deprecated: Deprecated functions in package 'derfinder'

In derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

Description

These functions are provided for compatibility with older version of ‘derfinder’ only and will be defunct at the next release.

Usage

advancedArg(fun, package = "derfinder", browse = interactive())

Arguments

fun	The name of a function(s) that has advanced arguments in package.
package	The name of the package where the function is stored. Only 'derfinder', 'derfinderPlot', and 'regionReport' are accepted.
browse	Whether to open the URLs in a browser.

Details

The following functions are deprecated and will be made defunct.

• advancedArg Not needed now that the advanced arguments are documented on the help pages of each function.

Value

A vector of URLs with the GitHub search queries.

Examples

## Open the advanced argument docs for loadCoverage()
if (interactive()) {
    advancedArg("loadCoverage")
} else {
    (advancedArg("loadCoverage", browse = FALSE))
}

derfinder documentation built on Dec. 20, 2020, 2 a.m.