- flowCore: flowCore: Basic structures for flow cytometry data
- filter-in-methods: Filter-specific membership methods
Filter-specific membership methods
Membership methods must be defined for every object of type
filter with respect to a
flowFrame object. The operation
is considered to be general and may return a
factor vector that will be handled
appropriately. The ability to handle logical matrices as well as vectors
is also planned but not yet implemented.
F.Hahne, B. Ellis
Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.
- actionItem-class: Class "actionItem"
- arcsinhTransform: Create the definition of an arcsinh transformation function...
- asinht-class: Class "asinht"
- asinhtGml2-class: Class asinhtGml2
- biexponentialTransform: Compute a transform using the 'biexponential' function
- boundaryFilter-class: Class "boundaryFilter"
- characterOrTransformation-class: Class "characterOrTransformation"
- checkOffset: Fix the offset when its values recorded in header and TEXT...
- coerce: Convert an object to another class
- compensateActionItem-class: Class "compensateActionItem"
- compensatedParameter-class: Class "compensatedParameter"
- compensateView-class: Class "compensateView"
- compensation-class: Class "compensation"
- concreteFilter-class: Class "concreteFilter"
- dg1polynomial-class: Class "dg1polynomial"
- each_col-methods: Method to apply functions over flowFrame margins
- EHtrans-class: Class "EHtrans"
- ellipsoidGate: Class "ellipsoidGate"
- estimateMedianLogicle: Estimates a common logicle transformation for a flowSet.
- exponential-class: Class "exponential"
- expressionFilter-class: Class "expressionFilter"
- fcReference-class: Class "fcReference" and its subclasses
- FCSTransTransform: Computes a transform using the 'iplogicle' function
- filter-and-methods: Take the intersection of two filters
- filter-class: A class for representing filtering operations to be applied...
- filterDetails-methods: Obtain details about a filter operation
- filter-in-methods: Filter-specific membership methods
- filterList-class: Class "filterList"
- filter-methods: Filter FCS files
- filter-on-methods: Methods for Function %on% in Package 'flowCore'
- filterReference-class: Class filterReference
- filterResult-class: Class "filterResult"
- filterResultList-class: Class "filterResultList"
- filters-class: Class "filters" and "filtersList"
- filterSet-class: Class filterSet(deprecated)
- filterSummary-class: Class "filterSummary"
- filterSummaryList-class: Class "filterSummaryList"
- flowCore-package: Provides S4 data structures and basic infrastructure and...
- flowFrame-class: 'flowFrame': a class for storing observed quantitative...
- flowSet-class: 'flowSet': a class for storing flow cytometry raw data from...
- fsApply: Apply a Function over values in a flowSet
- gateActionItem-class: Class "gateActionItem"
- gateView-class: Class "gateView"
- getChannelMarker: get channel and marker information from a 'flowFrame' that...
- getIndexSort-methods: Extract Index Sorted Data from an FCS File
- GvHD: Extract of a Graft versus Host Disease monitoring experiment...
- hyperlog-class: Class "hyperlog"
- hyperlogtGml2-class: Class hyperlogtGml2
- identifier-methods: Retrieve the GUID of flowCore objects
- inverseLogicleTransform: Computes the inverse of the transform defined by the...
- invsplitscale-class: Class "invsplitscale"
- keyword-methods: Methods to retrieve keywords of a flowFrame
- kmeansFilter: Class "kmeansFilter"
- linearTransform: Create the definition of a linear transformation function to...
- lintGml2-class: Class lintGml2
- lnTransform: Create the definition of a ln transformation function...
- logarithm-class: Class "logarithm"
- logicalFilterResult-class: Class "logicalFilterResult"
- logicletGml2-class: Class logicletGml2
- logicleTransform: Computes a transform using the 'logicle_transform' function
- logtGml2-class: Class logtGml2
- logTransform: Create the definition of a log transformation function (base...
- manyFilterResult-class: Class "manyFilterResult"
- markernames: get or update the marker names
- multipleFilterResult-class: Class "multipleFilterResult"
- norm2Filter-class: Class "norm2Filter"
- normalization-class: Class "normalization"
- normalizeActionItem-class: Class "normalizeActionItem"
- normalizeView-class: Class "normalizeView"
- parameterFilter-class: Class "parameterFilter"
- parameters-class: Class "parameters"
- parameters-methods: Obtain information about parameters for flow cytometry...
- parameterTransform-class: Class "parameterTransform"
- polygonGate: Class "polygonGate"
- polytopeGate: Define filter boundaries
- quadGate: Class "quadGate"
- quadratic-class: Class "quadratic"
- quadraticTransform: Create the definition of a quadratic transformation function...
- randomFilterResult-class: Class "randomFilterResult"
- ratio-class: Class "ratio"
- ratiotGml2-class: Class "ratiotGml2"
- read.FCS: Read an FCS file
- read.FCSheader: Read the TEXT section of a FCS file
- read.flowSet: Read a set of FCS files
- rectangleGate: Class "rectangleGate"
- sampleFilter-class: Class "sampleFilter"
- scaleTransform: Create the definition of a scale transformation function to...
- setOperationFilter-class: Class "setOperationFilter"
- singleParameterTransform-class: Class "singleParameterTransform"
- sinht-class: Class "sinht"
- spillover-flowSet: Compute a spillover matrix from a flowSet
- split-methods: Methods to split flowFrames and flowSets according to filters
- splitscale-class: Class "splitscale"
- splitScaleTransform: Compute the split-scale transformation describe by FL. Battye
- squareroot-class: Class "squareroot"
- Subset-methods: Subset a flowFrame or a flowSet
- subsettingActionItem-class: Class "subsettingActionItem"
- subsetting-class: Class "subsetting"
- subsettingView-class: Class "subsettingView"
- summarizeFilter-methods: Methods for function summarizeFilter
- timeFilter-class: Class "timeFilter"
- transformActionItem-class: Class "transformActionItem"
- transformation-class: Class "transformation"
- transform-class: 'transform': a class for transforming flow-cytometry data by...
- transformFilter-class: A class for encapsulating a filter to be performed on...
- transformList-class: Class "transformList"
- transformMap-class: A class for mapping transforms between parameters
- transformReference-class: Class "transformReference"
- transformView-class: Class "transformView"
- truncateTransform: Create the definition of a truncate transformation function...
- unitytransform-class: Class "unitytransform"
- validFilters: Check if all filters in a filters matches same paramters
- view-class: Class "view"
- workFlow-class: Class "workFlow"(deprecated)
- write.FCS: Write an FCS file
- write.flowSet: Write an FCS file