filterSummaryList-class: Class "filterSummaryList"

In flowCore: flowCore: Basic structures for flow cytometry data

Description

Class and methods to handle summary statistics for from filtering operations on whole flowSets.

Arguments

object	An object of class. filterResultList which is to be summarized.
...	Further arguments that are passed to the generic.

Details

Calling summary on a filterResultList object prints summary information on the screen, but also creates objects of class filterSummaryList for computational access.

Value

An object of class filterSummaryList.

Slots

.Data

Object of class "list". The class directly extends list, and this slot holds the list data.

Usage

summary(object, ...)

Objects from the Class

Objects are created by calling summary on a link{filterResultList} object. The user doesn't have to deal with manual object instantiation.

Extends

Class "list", from .Data part.

Methods

toTable

signature(x = "filterSummaryList"): Coerce object to data.frame. Additional factors are added to indicate list items in the original object.

Author(s)

Florian Hahne

See Also

filterResult, filterResultList, logicalFilterResult, multipleFilterResult, flowFrame filterSummary

Examples

library(flowStats)

## Loading example data, creating and applying a curv1Filter
data(GvHD)
dat <- GvHD[1:3]
c1f <- curv1Filter(filterId="myCurv1Filter", x=list("FSC-H"), bwFac=2)
fres <- filter(dat, c1f)

## creating and showing the summary
summary(fres)
s <- summary(fres)

## subsetting
s[[1]]

##accessing details
toTable(s)

flowCore documentation built on Nov. 8, 2020, 5:19 p.m.