flowCore: Basic structures for flow cytometry data

arcsinhTransform | Create the definition of an arcsinh transformation function... |

asinht-class | Class "asinht" |

asinhtGml2-class | Class asinhtGml2 |

biexponentialTransform | Compute a transform using the 'biexponential' function |

boundaryFilter-class | Class "boundaryFilter" |

characterOrNumeric-class | Class "characterOrNumeric" |

characterOrParameters-class | Class "characterOrParameters" |

characterOrTransformation-class | Class "characterOrTransformation" |

checkOffset | Fix the offset when its values recorded in header and TEXT... |

coerce | Convert an object to another class |

collapse_desc | Coerce the list of the keywords into a character Also flatten... |

compensatedParameter-class | Class "compensatedParameter" |

compensation-class | Class "compensation" |

complementFilter-class | Class complementFilter |

concreteFilter-class | Class "concreteFilter" |

CytoExploreR_exports | CytoExploreR exports |

decompensate | Decompensate a flowFrame |

dg1polynomial-class | Class "dg1polynomial" |

each_col | Methods to apply functions over flowFrame margins |

EHtrans-class | Class "EHtrans" |

ellipsoidGate-class | Class "ellipsoidGate" |

estimateMedianLogicle | Estimates a common logicle transformation for a flowSet. |

exponential-class | Class "exponential" |

expressionFilter-class | Class "expressionFilter" |

FCSTransTransform | Computes a transform using the 'iplogicle' function |

filter-and-methods | Take the intersection of two filters |

filter-class | A class for representing filtering operations to be applied... |

filterDetails-methods | Obtain details about a filter operation |

filter-in-methods | Filter-specific membership methods |

filterList-class | Class "filterList" |

filter-methods | Filter FCS files |

filter-on-methods | Methods for Function %on% in Package 'flowCore' |

filterReference-class | Class filterReference |

filterResult-class | Class "filterResult" |

filterResultList-class | Class "filterResultList" |

filters-class | Class "filters" and "filtersList" |

filterSummary-class | Class "filterSummary" |

filterSummaryList-class | Class "filterSummaryList" |

flowCore-package | flowCore: Basic structures for flow cytometry data |

flowFrame-class | 'flowFrame': a class for storing observed quantitative... |

flowSet-class | 'flowSet': a class for storing flow cytometry raw data from... |

flowSet_to_list | Convert a flowSet to a list of flowFrames |

fr_append_cols | Append data columns to a flowFrame |

fsApply | Apply a Function over values in a flowSet |

getChannelMarker | get channel and marker information from a 'flowFrame' that... |

getIndexSort | Extract Index Sorted Data from an FCS File |

GvHD | Extract of a Graft versus Host Disease monitoring experiment... |

hyperlog-class | Class "hyperlog" |

hyperlogtGml2-class | Class hyperlogtGml2 |

identifier-methods | Retrieve the GUID of flowCore objects |

intersectFilter-class | Class intersectFilter |

inverseLogicleTransform | Computes the inverse of the transform defined by the... |

invsplitscale-class | Class "invsplitscale" |

keyword-methods | Methods to retrieve keywords of a flowFrame |

kmeansFilter-class | Class "kmeansFilter" |

linearTransform | Create the definition of a linear transformation function to... |

lintGml2-class | Class lintGml2 |

lnTransform | Create the definition of a ln transformation function... |

logarithm-class | Class "logarithm" |

logicalFilterResult-class | Class "logicalFilterResult" |

logicletGml2-class | Class logicletGml2 |

logicleTransform | Computes a transform using the 'logicle_transform' function |

logtGml2-class | Class logtGml2 |

logTransform | Create the definition of a log transformation function (base... |

manyFilterResult-class | Class "manyFilterResult" |

markernames | get or update the marker names |

multipleFilterResult-class | Class "multipleFilterResult" |

normalization-class | Class "normalization" |

nullParameter-class | Class "nullParameter" |

parameterFilter-class | Class "parameterFilter" |

parameters-class | Class "parameters" |

parameters-methods | Obtain information about parameters for flow cytometry... |

parameterTransform-class | Class "parameterTransform" |

polygonGate-class | Class "polygonGate" |

polytopeGate-class | Define filter boundaries |

quadGate-class | Class "quadGate" |

quadratic-class | Class "quadratic" |

quadraticTransform | Create the definition of a quadratic transformation function... |

randomFilterResult-class | Class "randomFilterResult" |

ratio-class | Class "ratio" |

ratiotGml2-class | Class "ratiotGml2" |

read.FCS | Read an FCS file |

read.FCSheader | Read the TEXT section of a FCS file |

read.flowSet | Read a set of FCS files |

rectangleGate-class | Class "rectangleGate" |

rotate_gate | Simplified geometric rotation of gates |

sampleFilter-class | Class "sampleFilter" |

scale_gate | Simplified geometric scaling of gates |

scaleTransform | Create the definition of a scale transformation function to... |

setOperationFilter-class | Class "setOperationFilter" |

shift_gate | Simplified geometric translation of gates |

singleParameterTransform-class | Class "singleParameterTransform" |

sinht-class | Class "sinht" |

split-methods | Methods to split flowFrames and flowSets according to filters |

splitscale-class | Class "splitscale" |

splitScaleTransform | Compute the split-scale transformation describe by FL. Battye |

squareroot-class | Class "squareroot" |

subsetFilter-class | Class subsetFilter |

Subset-methods | Subset a flowFrame or a flowSet |

summarizeFilter-methods | Methods for function summarizeFilter |

timeFilter-class | Class "timeFilter" |

transform | Transform a flowFrame or flowSet |

transformation-class | Class "transformation" |

transform-class | 'transform': a class for transforming flow-cytometry data by... |

transformFilter-class | A class for encapsulating a filter to be performed on... |

transform_gate | Simplified geometric transformation of gates |

transformList-class | Class "transformList" |

transformMap-class | A class for mapping transforms between parameters |

transformReference-class | Class "transformReference" |

truncateTransform | Create the definition of a truncate transformation function... |

unionFilter-class | Class unionFilter |

unitytransform-class | Class "unitytransform" |

updateTransformKeywords | modify description to reflect the transformation Involve... |

validFilters | Check if all filters in a filters matches same paramters |

write.FCS | Write an FCS file |

write.flowSet | Write an FCS file |

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