Description Objects from the Class Slots Extends Methods Note Author(s) References See Also Examples

dg1polynomial allows for scaling,linear combination and translation within a single transformation defined by the function

*
f(parameter_1,...,parameter_n,a_1,...,a_n,b) = b + Σ_{i=1}^n
a_i*parameter_i
*

Objects can be created by using the constructor `dg1polynomial(parameter,a,b,transformationId)`

.

`.Data`

:Object of class

`"function"`

~~`parameters`

:Object of class

`"parameters"`

-the flow parameters that are to be transformed`a`

:Object of class

`"numeric"`

- coefficients of length equal to the number of flow parameters`b`

:Object of class

`"numeric"`

- coefficient of length 1 that performs the translation`transformationId`

:Object of class

`"character"`

unique ID to reference the transformation

Class `"transform"`

, directly.
Class `"transformation"`

, by class "transform", distance 2.
Class `"characterOrTransformation"`

, by class "transform", distance 3.

No methods defined with class "dg1polynomial" in the signature.

The transformation object can be evaluated using the eval method by passing the data frame as an argument.The transformed parameters are returned as a matrix with a single column.(See example below)

Gopalakrishnan N, F.Hahne

Gating-ML Candidate Recommendation for Gating Description in Flow Cytometry V 1.5

ratio,quadratic,squareroot

1 2 3 4 | ```
dat <- read.FCS(system.file("extdata","0877408774.B08",
package="flowCore"))
dg1<-dg1polynomial(c("FSC-H","SSC-H"),a=c(1,2),b=1,transformationId="dg1")
transOut<-eval(dg1)(exprs(dat))
``` |

flowCore documentation built on July 8, 2017, 2 a.m.

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