| .do_rledf_range_summary |
Man page
Source code
|
| .do_rledf_views |
Man page
Source code
|
| .rangeSegMeanLength |
Source code
|
| .rle_range_means |
Source code
|
| .rle_view_maxs |
Source code
|
| .rle_view_means |
Source code
|
| .rle_view_mins |
Source code
|
| .rle_view_sums |
Source code
|
| .rle_view_which_maxs |
Source code
|
| .rle_view_which_mins |
Source code
|
| GenoSet |
Man page
Source code
|
| GenoSet-class |
Man page
|
| GenoSetOrGenomicRanges-class |
Man page
|
| RleDataFrame |
Man page
Source code
|
| RleDataFrame-class |
Man page
|
| RleDataFrame-views |
Man page
|
| [,GenoSet,ANY,ANY,ANY-method |
Man page
|
| [<-,GenoSet,ANY,ANY,ANY-method |
Man page
|
| as.matrix,RleDataFrame-method |
Man page
|
| baf2mbaf |
Man page
Source code
|
| boundingIndices |
Man page
Source code
|
| boundingIndicesByChr |
Man page
Source code
|
| bounds2Rle |
Man page
Source code
|
| calcGC |
Man page
Source code
|
| calcGC2 |
Man page
Source code
|
| chr |
Man page
|
| chr,GenoSet-method |
Man page
|
| chr,GenomicRanges-method |
Man page
|
| chrIndices |
Man page
|
| chrIndices,GenoSetOrGenomicRanges-method |
Man page
|
| chrInfo |
Man page
|
| chrInfo,GenoSetOrGenomicRanges-method |
Man page
|
| chrNames |
Man page
|
| chrNames,GenoSet-method |
Man page
|
| chrNames,GenomicRanges-method |
Man page
|
| chrNames<- |
Man page
|
| chrNames<-,GenoSet-method |
Man page
|
| chrNames<-,GenomicRanges-method |
Man page
|
| chrOrder |
Man page
Source code
|
| chrPartitioning |
Man page
Source code
|
| cn2lr |
Man page
|
| cn2lr,DataFrame-method |
Man page
|
| cn2lr,matrix-method |
Man page
|
| cn2lr,numeric-method |
Man page
|
| coerce,RleDataFrame,matrix-method |
Man page
|
| colMeans,DataFrame-method |
Man page
|
| colMeans,RleDataFrame-method |
Man page
|
| colSums,RleDataFrame-method |
Man page
|
| fixSegNAs |
Man page
Source code
|
| gcCorrect |
Man page
Source code
|
| genoPlot |
Man page
|
| genoPlot,GenoSetOrGenomicRanges,ANY-method |
Man page
|
| genoPlot,numeric,Rle-method |
Man page
|
| genoPlot,numeric,numeric-method |
Man page
|
| genoPos |
Man page
|
| genoPos,GenoSetOrGenomicRanges-method |
Man page
|
| genome |
Man page
|
| genomeAxis |
Man page
Source code
|
| genoset |
Man page
|
| genoset-datasets |
Man page
|
| genoset-package |
Man page
|
| genoset.ds |
Man page
|
| isGenomeOrder |
Man page
Source code
|
| lengths,GenoSet-method |
Man page
|
| lr2cn |
Man page
Source code
|
| modeCenter |
Man page
Source code
|
| nrow,GenomicRanges-method |
Man page
|
| numCallable |
Man page
Source code
|
| pos,GenoSetOrGenomicRanges-method |
Man page
|
| rangeColMeans |
Man page
Source code
|
| rangeMaxs |
Man page
|
| rangeMaxs,RleDataFrame-method |
Man page
|
| rangeMeans |
Man page
|
| rangeMeans,RleDataFrame-method |
Man page
|
| rangeMeans,matrix-method |
Man page
|
| rangeMeans,numeric-method |
Man page
|
| rangeMins |
Man page
|
| rangeMins,RleDataFrame-method |
Man page
|
| rangeSampleMeans |
Man page
Source code
|
| rangeSegMeanLength |
Man page
|
| rangeSegMeanLength,GRanges,data.frame-method |
Man page
|
| rangeSegMeanLength,GRanges,list-method |
Man page
|
| rangeSums |
Man page
|
| rangeSums,RleDataFrame-method |
Man page
|
| rangeWhichMaxs |
Man page
|
| rangeWhichMaxs,RleDataFrame-method |
Man page
|
| rangeWhichMins |
Man page
|
| rangeWhichMins,RleDataFrame-method |
Man page
|
| rbindDataframe |
Man page
Source code
|
| readGenoSet |
Man page
Source code
|
| rowMeans,RleDataFrame-method |
Man page
|
| rowSums,RleDataFrame-method |
Man page
|
| runCBS |
Man page
Source code
|
| segPairTable |
Man page
|
| segPairTable,DataFrame,DataFrame-method |
Man page
|
| segPairTable,Rle,Rle-method |
Man page
|
| segTable |
Man page
|
| segTable,DataFrame-method |
Man page
|
| segTable,Rle-method |
Man page
|
| segs2Granges |
Man page
Source code
|
| segs2Rle |
Man page
Source code
|
| segs2RleDataFrame |
Man page
Source code
|
| show,RleDataFrame-method |
Man page
|
| toGenomeOrder |
Man page
Source code
|
