Files in genoset

A RangedSummarizedExperiment with methods for copy number analysis

R/RleDataFrame-class.R R/utils.R R/genoset-class.R R/ordering.R R/bounds.R R/rangeSummaries.R R/segments.R R/plots.R R/RleDataFrame-methods.R vignettes/genoset.Rmd man/genome.Rd man/genoset-methods.Rd man/modeCenter.Rd man/calcGC.Rd man/pos-methods.Rd man/toGenomeOrder.Rd man/chrIndices-methods.Rd man/runCBS.Rd man/boundingIndicesByChr.Rd man/chrOrder.Rd man/genomicranges-methods.Rd man/segs2Granges.Rd man/genoset-package.Rd man/segPairTable-methods.Rd man/chr-methods.Rd man/numCallable.Rd man/do_rledf_views.Rd man/rbindDataframe.Rd man/chrInfo-methods.Rd man/genoPos-methods.Rd man/isGenomeOrder.Rd man/genoset-dataset.Rd man/bounds2Rle.Rd man/boundingIndices.Rd man/segs2Rle.Rd man/genoPlot-methods.Rd man/GenoSet-class.Rd man/lr2cn.Rd man/baf2mbaf.Rd man/genomeAxis.Rd man/RleDataFrame-views.Rd man/genoset-subset.Rd man/chrNames-methods.Rd man/gcCorrect.Rd man/chrPartitioning.Rd man/calcGC2.Rd man/RleDataFrame-class.Rd man/rangeSegMeanLength-methods.Rd man/do_rledf_range_summary.Rd man/rangeSampleMeans.Rd man/segTable-methods.Rd man/fixSegNAs.Rd man/segs2RleDataFrame.Rd man/cn2lr-methods.Rd man/readGenoSet.Rd tests/testthat.R tests/testthat/test_c_utils.R tests/testthat/test_DataFrame.R tests/testthat/test_bounds.R tests/testthat/test_RleDataFrame-views.R tests/testthat/test_segments.R tests/testthat/test_utils.R tests/testthat/test_genoset-class.R tests/testthat/test_locations.R tests/testthat/test_plots.R inst/doc/genoset.Rmd inst/doc/genoset.R inst/scripts/make.fake.genoset.data.R