msigdb_gsets: Download data from msigdb in the form of a gsets object
In hypeR: An R Package For Geneset Enrichment Workflows
Description
Usage
Arguments
Value
Examples
Description
Download data from msigdb in the form of a gsets object
Usage
1
msigdb_gsets(species, category, subcategory = "", clean = FALSE)
Arguments
species
A species to determine gene symbols (refer to ?msigdbr::msigdbr for avilable species)
category
Geneset category (refer to ?msigdbr::msigdbr for avilable categories)
subcategory
Geneset subcategory (refer to ?msigdbr::msigdbr for avilable subcategories)
clean
Use true to clean labels of genesets
Value
A gsets object
Examples
1
HALLMARK <- msigdb_gsets("Homo sapiens", "H", "")
hypeR documentation built on Nov. 8, 2020, 8:19 p.m.
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Description Usage Arguments Value Examples
Description
Download data from msigdb in the form of a gsets object
Usage
1 | msigdb_gsets(species, category, subcategory = "", clean = FALSE)
|
Arguments
species |
A species to determine gene symbols (refer to ?msigdbr::msigdbr for avilable species) |
category |
Geneset category (refer to ?msigdbr::msigdbr for avilable categories) |
subcategory |
Geneset subcategory (refer to ?msigdbr::msigdbr for avilable subcategories) |
clean |
Use true to clean labels of genesets |
Value
A gsets object
Examples
1 | HALLMARK <- msigdb_gsets("Homo sapiens", "H", "")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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