Description Usage Arguments Examples
Export hyp/multihyp object to table
1 | hyp_to_table(hyp_obj, file_path, sep = "\t", cols = NULL, versioning = TRUE)
|
hyp_obj |
A hyp or multihyp object |
file_path |
A file path for hyp objects and directory for multihyp objects |
sep |
The field separator string |
cols |
Dataframe columns to include |
versioning |
Add header with versioning information |
1 2 3 4 5 6 7 8 9 | genesets <- msigdb_gsets("Homo sapiens", "C2", "CP:KEGG")
signature <- c("IDH3B","DLST","PCK2","CS","PDHB","PCK1","PDHA1","LOC642502",
"PDHA2","LOC283398","FH","SDHD","OGDH","SDHB","IDH3A","SDHC",
"IDH2","IDH1","OGDHL","PC","SDHA","SUCLG1","SUCLA2","SUCLG2")
hyp_obj <- hypeR(signature, genesets, background=2522)
hyp_to_table(hyp_obj, file_path="pathways.txt")
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