rctbl_hyp: Reactable table for hyp objects

In hypeR: An R Package For Geneset Enrichment Workflows

Description

Reactable table for hyp objects

Usage

rctbl_hyp(
  hyp,
  type = c("inner", "outer"),
  show_emaps = FALSE,
  show_hmaps = FALSE,
  hyp_emap_args = list(top = 25, val = "fdr"),
  hyp_hmap_args = list(top = 25, val = "fdr")
)

Arguments

hyp	A hyp object
type	Use style class for outer or inner tables
show_emaps	Option to show enrichment maps in tabs
show_hmaps	Option to show hiearchy maps in tabs
hyp_emap_args	A list of keyword arguments passed to hyp_emap
hyp_hmap_args	A list of keyword arguments passed to hyp_hmap

Examples

genesets <- msigdb_gsets("Homo sapiens", "C2", "CP:KEGG")$genesets[1:5]

signature <- c("IDH3B","DLST","PCK2","CS","PDHB","PCK1","PDHA1","LOC642502",
              "PDHA2","LOC283398","FH","SDHD","OGDH","SDHB","IDH3A","SDHC",
              "IDH2","IDH1","OGDHL","PC","SDHA","SUCLG1","SUCLA2","SUCLG2")

hyp_obj <- hypeR(signature, genesets, background=2522)

rctbl_hyp(hyp_obj)

hypeR documentation built on Nov. 8, 2020, 8:19 p.m.