dot-enrichment_map: Plot enrichment map

Description Usage Arguments Value

Description

Plot enrichment map

Usage

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
.enrichment_map(
  hyp_df,
  genesets,
  similarity_metric = c("jaccard_similarity", "overlap_similarity"),
  similarity_cutoff = 0.2,
  pval_cutoff = 1,
  fdr_cutoff = 1,
  val = c("fdr", "pval"),
  top = NULL,
  title = ""
)

Arguments

hyp_df

A dataframe from a hyp object

genesets

A list of genesets

similarity_metric

Metric to calculate geneset similarity

similarity_cutoff

Geneset similarity cutoff

pval_cutoff

Filter results to be less than pval cutoff

fdr_cutoff

Filter results to be less than fdr cutoff

val

Choose significance value shown above nodes e.g. c("fdr", "pval")

top

Limit number of pathways shown

title

Plot title

Value

A visNetwork object


hypeR documentation built on Nov. 8, 2020, 8:19 p.m.