API for isomiRs
Analyze isomiRs and miRNAs from small RNA-seq
| Global functions | |
|---|---|
| .IsomirDataSeq | Source code |
| .apply_median | Source code |
| .clean_noise | Source code |
| .cluster_exp | Source code |
| .convert_names | Source code |
| .cor_matrix | Source code |
| .detect_gene_symbol | Source code |
| .fix_term_name | Source code |
| .is_mapping_needed | Source code |
| .make_uid | Source code |
| .median_by_group | Source code |
| .no_na | Source code |
| .plot_profiles | Source code |
| .predict_correlate_mirna_targets | Source code |
| .reduce_mirna | Source code |
| .remove_gt_n_changes | Source code |
| .scale | Source code |
| .summary_mirna | Source code |
| .viz_mirna_gene_enrichment | Source code |
| IsomirDataSeq | Man page |
| IsomirDataSeq-class | Man page |
| IsomirDataSeqFromFiles | Man page Source code |
| IsomirDataSeqFromMirtop | Man page Source code |
| IsomirDataSeqFromRawData | Man page Source code |
| R2PermutationVector | Source code |
| R2RefinedPermutationVector | Source code |
| counts | Man page |
| counts,IsomirDataSeq-method | Man page |
| counts.IsomirDataSeq | Man page Source code |
| counts<-,IsomirDataSeq,matrix-method | Man page |
| dat286.long | Man page |
| design | Man page |
| design,IsomirDataSeq-method | Man page |
| design.IsomirDataSeq | Source code |
| design<-,IsomirDataSeq,formula-method | Man page |
| ego | Man page |
| findTargets | Man page Source code |
| gene_ex_rse | Man page |
| isoAnnotate | Man page Source code |
| isoCounts | Man page Source code |
| isoDE | Man page Source code |
| isoNetwork | Man page Source code |
| isoNorm | Man page |
| isoPLSDA | Man page Source code |
| isoPLSDAplot | Man page |
| isoPlot | Man page Source code |
| isoPlotNet | Man page Source code |
| isoPlotPosition | Man page Source code |
| isoSelect | Man page |
| isoSelect,IsomirDataSeq-method | Man page |
| isoSelect.IsomirDataSeq | Man page Source code |
| isoTop | Man page Source code |
| isomiRs | Man page |
| isomiRs-package | Man page |
| ma_ex | Man page |
| mirData | Man page |
| mirTritation | Man page |
| mirna2targetscan | Man page Source code |
| mirna_ex_rse | Man page |
| pairsMatrix | Source code |
| updateIsomirDataSeq | Man page Source code |
