Files in kebabs
Kernel-Based Analysis Of Biological Sequences
README.md
kebabs documentation built on Nov. 8, 2020, 7:38 p.m.
NAMESPACE
DESCRIPTION
build/vignette.rds
src/MismatchC.cpp
src/ExplicitRepC.h
src/FeatureWeightsPosDepC.h
src/PredictionC.cpp
src/MotifC.cpp
src/Utils.cpp
src/SpectrumC.h
src/ByteStringVector.c
src/MismatchC.h
src/FeatureWeightsPosDepC.cpp
src/SpectrumC.cpp
src/Kebabs.h
src/ByteStringVector.h
src/svm.cpp
src/SymmetricPairC.cpp
src/SymmetricPairC.h
src/ExplicitRepC.cpp
src/SparseMatrixHash.cpp
src/GappyPairC.cpp
src/KernelUtils.cpp
src/FeatureVectorC.h
src/Rsvm.c
src/IntegerPowers64.h
src/ksort.h
src/IRanges_stubs.c
src/khash.h
src/XVector_stubs.c
src/Utils.h
src/R_init_kebabs.cpp
src/GappyPairC.h
src/SparseMatrixHash.h
src/PredictionProfileC.h
src/svm.h
src/MotifC.h
src/Biostrings_stubs.c
src/BitArray.h
src/KernelUtils.h
src/PredictionC.h
src/PredictionProfileC.cpp
data/TFBS.RData
data/datalist
data/CCoil.RData
R/sequenceKernel.R
R/annotationSpecificKernel.R
R/kebabsDemo.R
R/heatmap-methods.R
R/predict-methods.R
R/show-methods.R
R/spectrum.R
R/kebabsData.R
R/symmetricPair.R
R/positionDependentKernel.R
R/AllGenerics.R
R/explicitRepresentation.R
R/utils.R
R/mismatch.R
R/modelSelection.R
R/parameters.R
R/motif.R
R/predictsvm-methods.R
R/zzz.R
R/kbsvm-methods.R
R/predictionProfile.R
R/runtimeMessage.R
R/trainsvm-methods.R
R/plot-methods.R
R/gridSearch.R
R/AllClasses.R
R/coerce-methods.R
R/performCrossValidation-methods.R
R/access-methods.R
R/gappyPair.R
R/featureWeights.R
R/kebabs.R
R/svm.R
R/svmModel.R
vignettes/literature.bib
vignettes/bioinf-article.txi
vignettes/Heatmap.png
vignettes/natbib.sty
vignettes/kebabs.Rnw
vignettes/plainnat.bst
vignettes/bioinf-bar.png
vignettes/JKU_EN_noName.pdf
vignettes/bioinf.cls
man/show-methods.Rd
man/mismatchKernel.Rd
man/performModelSelection.Rd
man/featureWeights.Rd
man/SequenceKernel-class.Rd
man/ExplicitRepresentationAccessors.Rd
man/motifKernel.Rd
man/kebabsData.Rd
man/computeROCandAUC.Rd
man/sequenceKernel.Rd
man/symmetricPairKernel.Rd
man/MotifKernel-class.Rd
man/getPredProfMixture-methods.Rd
man/predict-methods.Rd
man/gappyPairKernel.Rd
man/BioVector-class.Rd
man/performGridSearch.Rd
man/positionDependentKernel.Rd
man/SpectrumKernel-class.Rd
man/SVMInformation-class.Rd
man/BioVector.Rd
man/KBModelAccessors.Rd
man/performCrossValidation-methods.Rd
man/PredictionProfileAccessors.Rd
man/annotationSpecificKernel.Rd
man/ControlInformation-class.Rd
man/explicitRepresentation.Rd
man/getPredictionProfile-methods.Rd
man/GappyPairKernel-class.Rd
man/kebabsCollectInfo.Rd
man/ModelSelectionResultAccessors.Rd
man/kebabsOverview.Rd
man/KernelMatrixAccessors.Rd
man/spectrumKernel.Rd
man/heatmap-methods.Rd
man/PredictionProfile-class.Rd
man/ROCDataAccessors.Rd
man/genRandBioSeqs.Rd
man/KernelMatrix-class.Rd
man/MismatchKernel-class.Rd
man/CrossValidationResultAccessors.Rd
man/LinearKernel.Rd
man/SymmetricPairKernel-class.Rd
man/ExplicitRepresentation-class.Rd
man/CrossValidationResult-class.Rd
man/SVMAccess.Rd
man/ROCData-class.Rd
man/ModelSelectionResult-class.Rd
man/plot-methods.Rd
man/kbsvm-methods.Rd
man/KBModel-class.Rd
man/evaluatePrediction.Rd
inst/COPYRIGHT
inst/NEWS
inst/CITATION
inst/doc/kebabs.Rnw
inst/doc/kebabs.pdf
inst/doc/kebabs.R
inst/examples/UserDefinedSequenceKernel/SpectrumKernlabKernel/RunKernel.R
inst/examples/UserDefinedSequenceKernel/SpectrumKernlabKernel/SpectrumKernlabKernel.R
