GISTIC-class: Class GISTIC

In maftools: Summarize, Analyze and Visualize MAF Files

Description

S4 class for storing summarized MAF.

Slots

data

data.table of summarized GISTIC file.

cnv.summary

table containing alterations per sample

cytoband.summary

table containing alterations per cytoband

gene.summary

table containing alterations per gene

cnMatrix

character matrix of dimension n*m where n is number of genes and m is number of samples

numericMatrix

numeric matrix of dimension n*m where n is number of genes and m is number of samples

gis.scores

gistic.scores

summary

table with basic GISTIC summary stats

classCode

mapping between numeric values in numericMatrix and copy number events.

See Also

getGeneSummary getSampleSummary getCytobandSummary

maftools documentation built on Feb. 6, 2021, 2 a.m.