compareSignatures: Compares identified denovo mutational signatures to known...
In maftools: Summarize, Analyze and Visualize MAF Files
Description
Usage
Arguments
Details
Value
See Also
View source: R/compareSignatures.R
Description
Takes results from extractSignatures and compares them known COSMIC signatures. Two COSMIC databases are used for comparisons - "legacy" which includes 30 signaures, and "SBS" - which includes updated/refined 65 signatures
Usage
1
compareSignatures(nmfRes, sig_db = "legacy", verbose = TRUE)
Arguments
nmfRes
results from extractSignatures
sig_db
can be legacy or SBS. Default legacy
verbose
Default TRUE
Details
SBS signature database was obtained from https://www.synapse.org/#!Synapse:syn11738319.7
Value
list containing cosine smilarities, aetiologies if available, and best match.
See Also
trinucleotideMatrix extractSignatures plotSignatures
maftools documentation built on Feb. 6, 2021, 2 a.m.
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Description Usage Arguments Details Value See Also
View source: R/compareSignatures.R
Description
Takes results from extractSignatures and compares them known COSMIC signatures. Two COSMIC databases are used for comparisons - "legacy" which includes 30 signaures, and "SBS" - which includes updated/refined 65 signatures
Usage
1 | compareSignatures(nmfRes, sig_db = "legacy", verbose = TRUE)
|
Arguments
nmfRes |
results from |
sig_db |
can be |
verbose |
Default TRUE |
Details
SBS signature database was obtained from https://www.synapse.org/#!Synapse:syn11738319.7
Value
list containing cosine smilarities, aetiologies if available, and best match.
See Also
trinucleotideMatrix extractSignatures plotSignatures
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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