S4 class for storing summarized MAF.
data
data.table of MAF file containing all non-synonymous variants.
variants.per.sample
table containing variants per sample
variant.type.summary
table containing variant types per sample
variant.classification.summary
table containing variant classification per sample
gene.summary
table containing variant classification per gene
summary
table with basic MAF summary stats
maf.silent
subset of main MAF containing only silent variants
clinical.data
clinical data associated with each sample/Tumor_Sample_Barcode in MAF.
getGeneSummary
getSampleSummary
getFields
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