oncostrip: draw an oncostrip similar to cBioportal oncoprinter output.
In maftools: Summarize, Analyze and Visualize MAF Files
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
draw an oncostrip similar to cBioportal oncoprinter output.
Usage
1
Arguments
maf
an MAF object generated by read.maf
...
arguments passed oncoplot
Details
This is just a wrapper around oncoplot with drawRowBar and drawColBar set to FALSE
Value
None.
See Also
Examples
1
2
3
4
laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
dev.new()
oncostrip(maf = laml, genes = c('NPM1', 'RUNX1'))
maftools documentation built on Feb. 6, 2021, 2 a.m.
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Description Usage Arguments Details Value See Also Examples
Description
draw an oncostrip similar to cBioportal oncoprinter output.
Usage
1 |
Arguments
maf |
an |
... |
arguments passed |
Details
This is just a wrapper around oncoplot with drawRowBar and drawColBar set to FALSE
Value
None.
See Also
Examples
1 2 3 4 | laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
dev.new()
oncostrip(maf = laml, genes = c('NPM1', 'RUNX1'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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