mafSummary: Summary statistics of MAF
In maftools: Summarize, Analyze and Visualize MAF Files
Description
Usage
Arguments
Details
Value
See Also
Examples
View source: R/mafGeneSummary.R
Description
Summarizes genes and samples irrespective of the type of alteration. This is different from getSampleSummary and getGeneSummary which returns summaries of only non-synonymous variants.
Usage
1
mafSummary(maf)
Arguments
maf
an MAF object generated by read.maf
Details
This function takes MAF object as input and returns summary table.
Value
Returns a list of summarized tables
See Also
getGeneSummary getSampleSummary
Examples
1
2
3
laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
mafSummary(maf = laml)
maftools documentation built on Feb. 6, 2021, 2 a.m.
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Description Usage Arguments Details Value See Also Examples
View source: R/mafGeneSummary.R
Description
Summarizes genes and samples irrespective of the type of alteration. This is different from getSampleSummary and getGeneSummary which returns summaries of only non-synonymous variants.
Usage
1 | mafSummary(maf)
|
Arguments
maf |
an MAF object generated by |
Details
This function takes MAF object as input and returns summary table.
Value
Returns a list of summarized tables
See Also
getGeneSummary getSampleSummary
Examples
1 2 3 | laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
mafSummary(maf = laml)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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