Description Usage Arguments Value See Also Examples
Takes results generated from titv
and plots the Ti/Tv ratios and contributions of 6 mutational conversion classes in each sample.
1 2 3 4 5 6 7 8 9 10 11 |
res |
results generated by |
plotType |
Can be 'bar', 'box' or 'both'. Defaults to 'both' |
sampleOrder |
Sample names in which the barplot should be ordered. Default NULL |
color |
named vector of colors for each coversion class. |
showBarcodes |
Whether to include sample names for barplot |
textSize |
fontsize if showBarcodes is TRUE. Deafult 2. |
baseFontSize |
font size. Deafult 1. |
axisTextSize |
text size x and y tick labels. Default c(1,1). |
plotNotch |
logical. Include notch in boxplot. |
None.
1 2 3 4 | laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
laml.titv = titv(maf = laml, useSyn = TRUE)
plotTiTv(laml.titv)
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