Description Usage Arguments Value See Also Examples
takes output generated by read.maf and classifies Single Nucleotide Variants into Transitions and Transversions.
1 |
maf |
an |
useSyn |
Logical. Whether to include synonymous variants in analysis. Defaults to FALSE. |
plot |
plots a titv fractions. default TRUE. |
file |
basename for output file name. If given writes summaries to output file. Default NULL. |
list of data.frame
s with Transitions and Transversions summary.
1 2 3 | laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
laml.titv = titv(maf = laml, useSyn = TRUE)
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