matter
A framework for rapid prototyping with file-based data structures

Package index
Search the matter package
Vignettes
Functions
738
Source code
44
Man pages
36
Home
/
Bioconductor
/
matter: A framework for rapid prototyping with file-based data structures
/
API

API for matter
A framework for rapid prototyping with file-based data structures

Global functions
$,matter_list-method Man page
$,virtual_df-method Man page
$<-,matter_list-method Man page
$<-,virtual_df-method Man page
%*%,matrix,matter_mat-method Man page
%*%,matrix,sparse_matc-method Man page
%*%,matrix,sparse_matr-method Man page
%*%,matrix,virtual_matc-method Man page
%*%,matrix,virtual_matr-method Man page
%*%,matter,matter-method Man page
%*%,matter,numeric-method Man page
%*%,matter_mat,matrix-method Man page
%*%,numeric,matter-method Man page
%*%,sparse_matc,matrix-method Man page
%*%,sparse_matr,matrix-method Man page
%*%,virtual_matc,matrix-method Man page
%*%,virtual_matr,matrix-method Man page
.onLoad Source code
Arith Man page
Arith,matter_arr,matter_arr-method Man page
Arith,matter_arr,numeric-method Man page
Arith,matter_fc,matter_fc-method Man page
Arith,matter_fc,numeric-method Man page
Arith,matter_matc,matter_matc-method Man page
Arith,matter_matc,numeric-method Man page
Arith,matter_matr,matter_matr-method Man page
Arith,matter_matr,numeric-method Man page
Arith,matter_vec,matter_vec-method Man page
Arith,matter_vec,numeric-method Man page
Arith,numeric,matter_arr-method Man page
Arith,numeric,matter_fc-method Man page
Arith,numeric,matter_matc-method Man page
Arith,numeric,matter_matr-method Man page
Arith,numeric,matter_vec-method Man page
Compare Man page
Compare,character,matter_fc-method Man page
Compare,factor,matter_fc-method Man page
Compare,matter_arr,matter_arr-method Man page
Compare,matter_arr,numeric-method Man page
Compare,matter_arr,raw-method Man page
Compare,matter_fc,character-method Man page
Compare,matter_fc,factor-method Man page
Compare,matter_fc,matter_fc-method Man page
Compare,matter_fc,numeric-method Man page
Compare,matter_matc,matter_matc-method Man page
Compare,matter_matc,numeric-method Man page
Compare,matter_matc,raw-method Man page
Compare,matter_matr,matter_matr-method Man page
Compare,matter_matr,numeric-method Man page
Compare,matter_matr,raw-method Man page
Compare,matter_vec,matter_vec-method Man page
Compare,matter_vec,numeric-method Man page
Compare,matter_vec,raw-method Man page
Compare,numeric,matter_arr-method Man page
Compare,numeric,matter_fc-method Man page
Compare,numeric,matter_matc-method Man page
Compare,numeric,matter_matr-method Man page
Compare,numeric,matter_vec-method Man page
Compare,raw,matter_arr-method Man page
Compare,raw,matter_matc-method Man page
Compare,raw,matter_matr-method Man page
Compare,raw,matter_vec-method Man page
Logic Man page
Logic,logical,matter_arr-method Man page
Logic,logical,matter_matc-method Man page
Logic,logical,matter_matr-method Man page
Logic,logical,matter_vec-method Man page
Logic,matter_arr,logical-method Man page
Logic,matter_arr,matter_arr-method Man page
Logic,matter_matc,logical-method Man page
Logic,matter_matc,matter_matc-method Man page
Logic,matter_matr,logical-method Man page
Logic,matter_matr,matter_matr-method Man page
Logic,matter_vec,logical-method Man page
Logic,matter_vec,matter_vec-method Man page
Ops Man page
Summary Man page
[,atoms,ANY,ANY,ANY-method Man page
[,atoms,ANY,missing,ANY-method Man page
[,atoms,missing,ANY,ANY-method Man page
[,drle,ANY,missing,missing-method Man page
[,drle,missing,missing,missing-method Man page
[,matter_arr,ANY,ANY,ANY-method Man page
[,matter_arr-method Man page
[,matter_fc,ANY,missing,ANY-method Man page
[,matter_fc,ANY,missing,NULL-method Man page
[,matter_fc-method Man page
[,matter_list,ANY,missing,ANY-method Man page
[,matter_list,ANY,missing,NULL-method Man page
[,matter_list-method Man page
[,matter_mat,ANY,ANY,ANY-method Man page
[,matter_mat,ANY,ANY,NULL-method Man page
[,matter_mat-method Man page
[,matter_str,ANY,missing,ANY-method Man page
[,matter_str,ANY,missing,NULL-method Man page
[,matter_str-method Man page
[,matter_vec,ANY,missing,ANY-method Man page
[,matter_vec,ANY,missing,NULL-method Man page
[,matter_vec-method Man page
[,rep_vt,ANY,missing,missing-method Man page
[,rep_vt,missing,missing,missing-method Man page
[,sparse_mat,ANY,ANY,ANY-method Man page
[,sparse_mat,ANY,ANY,NULL-method Man page
[,sparse_mat-method Man page
[,virtual_df,ANY,ANY,ANY-method Man page
[,virtual_df,ANY,ANY,NULL-method Man page
[,virtual_df-method Man page
[,virtual_mat,ANY,ANY,ANY-method Man page
[,virtual_mat,ANY,ANY,NULL-method Man page
[,virtual_mat,ANY,missing,ANY-method Man page
[,virtual_mat,ANY,missing,NULL-method Man page
[,virtual_mat,missing,ANY,ANY-method Man page
[,virtual_mat,missing,ANY,NULL-method Man page
[,virtual_mat,missing,missing,ANY-method Man page
[,virtual_mat-method Man page
[<-,matter_arr,ANY,ANY,ANY-method Man page
[<-,matter_arr-method Man page
[<-,matter_fc,ANY,missing,ANY-method Man page
[<-,matter_fc-method Man page
[<-,matter_list,ANY,missing,ANY-method Man page
[<-,matter_list-method Man page
[<-,matter_mat,ANY,ANY,ANY-method Man page
[<-,matter_mat-method Man page
[<-,matter_str,ANY,missing,ANY-method Man page
[<-,matter_str-method Man page
[<-,matter_vec,ANY,missing,ANY-method Man page
[<-,matter_vec-method Man page
[<-,sparse_mat,ANY,ANY,ANY-method Man page
[<-,sparse_mat-method Man page
[<-,virtual_df,ANY,ANY,ANY-method Man page
[<-,virtual_df-method Man page
[[,atoms,ANY,ANY-method Man page
[[,atoms-method Man page
[[,matter_list,ANY,ANY-method Man page
[[,rep_vt,ANY,ANY-method Man page
[[,virtual_df,ANY,missing-method Man page
[[<-,matter_list,ANY,ANY-method Man page
[[<-,virtual_df,ANY,missing-method Man page
`[.stream_stat` Source code
`[[.stream_stat` Source code
adata Man page
adata,matter-method Man page
all,matter-method Man page
allIndices Source code
any,matter-method Man page
apply Man page
apply,matter_mat-method Man page
apply,sparse_mat-method Man page
apply,virtual_mat-method Man page
apply_int Source code
as.altrep Man page
as.altrep,ANY-method Man page
as.altrep,data.frame-method Man page
as.altrep,list-method Man page
as.altrep,matter_arr-method Man page
as.altrep,matter_df-method Man page
as.altrep,matter_fc-method Man page
as.altrep,matter_list-method Man page
as.altrep,matter_mat-method Man page
as.altrep,matter_str-method Man page
as.altrep,matter_vec-method Man page
as.altrep,virtual_df-method Man page
as.array,matter_arr-method Man page
as.array,matter_vec-method Man page
as.character,matter_str-method Man page
as.character,matter_vec-method Man page
as.data.frame,atoms-method Man page
as.data.frame,matter_df-method Man page
as.data.frame,virtual_df-method Man page
as.factor,matter_fc-method Man page
as.integer,matter_arr-method Man page
as.integer,matter_mat-method Man page
as.integer,matter_vec-method Man page
as.list,atoms-method Man page
as.list,drle-method Man page
as.list,matter_list-method Man page
as.list,rep_vt-method Man page
as.logical,matter_arr-method Man page
as.logical,matter_mat-method Man page
as.logical,matter_vec-method Man page
as.matrix,matter_arr-method Man page
as.matrix,matter_mat-method Man page
as.matrix,matter_vec-method Man page
as.matrix,sparse_mat-method Man page
as.matrix,virtual_mat-method Man page
as.matter Man page Source code
as.matter_arr Source code
as.matter_df Source code
as.matter_fc Source code
as.matter_list Source code
as.matter_mat Source code
as.matter_str Source code
as.matter_vec Source code
as.native Source code
as.nativelist Source code
as.numeric,matter_arr-method Man page
as.numeric,matter_mat-method Man page
as.numeric,matter_vec-method Man page
as.raw,matter_arr-method Man page
as.raw,matter_mat-method Man page
as.raw,matter_vec-method Man page
as.sparse Man page Source code
as.vector,drle-method Man page
as.vector,matter_arr-method Man page
as.vector,matter_mat-method Man page
as.vector,matter_str-method Man page
as.vector,matter_vec-method Man page
as.vector,rep_vt-method Man page
as.virtual Man page Source code
as.virtual_df Source code
as_ALTREP Source code
as_sparse_mat_combiner Source code
as_sparse_mat_tolerance Source code
atomdata Man page
atomdata,matter-method Man page
atomdata<- Man page
atomdata<-,matter-method Man page
atoms Man page Source code
bigglm Man page
bigglm,formula,matter_mat-method Man page
bigglm,formula,sparse_mat-method Man page
bigglm,formula,virtual_df-method Man page
bigglm,formula,virtual_mat-method Man page
bigglm.out Man page
biglm Man page
biglm,formula,virtual_df-method Man page
binFun Source code
binMaxs Source code
binMeans Source code
binMins Source code
binSums Source code
bind_elements Source code
binvec Man page Source code
bsearch Man page Source code
bsearch_int Source code
c,atoms-method Man page
c,drle-method Man page
c,matter-method Man page
c,matter_vec-method Man page
c.stream_stat Source code
cbind,matter-method Man page
char2raw Source code
check_comformable_dims Source code
check_comformable_lengths Source code
check_compatible_classes Source code
checksum Man page
checksum,matter-method Man page
chunk_along Source code
chunk_apply Man page Source code
chunk_attr Source code
chunk_label Source code
chunk_len Source code
chunk_mapply Man page Source code
chunk_pattern Source code
chunk_split Source code
chunksize Man page
chunksize,matter-method Man page
chunksize<- Man page
chunksize<-,matter-method Man page
chunksize<-,matter_vt-method Man page
class:drle Man page
class:matter Man page
class:matter_arr Man page
class:matter_df Man page
class:matter_fc Man page
class:matter_list Man page
class:matter_mat Man page
class:matter_str Man page
class:matter_vec Man page
class:rep_vt Man page
class:sparse_mat Man page
class:virtual_df Man page
class:virtual_mat Man page
class:virtual_tbl Man page
colMeans,matter_mat-method Man page
colSds Man page
colSds,matter_mat-method Man page
colStats Man page
colStats,ANY-method Man page
colStats,matter_matr-method Man page
colStats,sparse_matr-method Man page
colStats,virtual_matr-method Man page
colSums,matter_mat-method Man page
colVars Man page
colVars,matter_mat-method Man page
collect_by_key Source code
colstreamStats Man page Source code
combine Man page
combine,ANY,ANY-method Man page
combine,atoms,ANY-method Man page
combine,drle,drle-method Man page
combine,drle,numeric-method Man page
combine,matter_fc,ANY-method Man page
combine,matter_list,ANY-method Man page
combine,matter_str,ANY-method Man page
combine,matter_vec,ANY-method Man page
combine,numeric,drle-method Man page
combine,stream_stat,ANY-method Man page
combine_atoms Source code
combine_colnames Source code
combine_list Source code
combine_rownames Source code
combiner Man page
combiner,sparse_mat-method Man page
combiner<- Man page
combiner<-,sparse_mat-method Man page
common_filemode Man page Source code
convert_datamode Man page Source code
crossprod,ANY,matter-method Man page
crossprod,matter,ANY-method Man page
data:matter_ex Man page
data:matter_msi Man page
data:matter_sim Man page
datamode Man page
datamode,atoms-method Man page
datamode,matter-method Man page
datamode<- Man page
datamode<-,atoms-method Man page
datamode<-,matter-method Man page
datamode<-,matter_vt-method Man page
datamode<-,sparse_mat-method Man page
datamode<-,virtual_mat-method Man page
datatypes Man page
describe_for_display Man page
describe_for_display,ANY-method Man page
describe_for_display,atoms-method Man page
describe_for_display,drle-method Man page
describe_for_display,matter_arr-method Man page
describe_for_display,matter_df-method Man page
describe_for_display,matter_fc-method Man page
describe_for_display,matter_list-method Man page
describe_for_display,matter_mat-method Man page
describe_for_display,matter_str-method Man page
describe_for_display,matter_vec-method Man page
describe_for_display,rep_vt-method Man page
describe_for_display,sparse_mat-method Man page
describe_for_display,virtual_mat-method Man page
describe_for_display,virtual_tbl-method Man page
dim,atoms-method Man page
dim,matter-method Man page
dim,matter_list-method Man page
dim<-,matter-method Man page
dim<-,matter_arr-method Man page
dim<-,matter_mat-method Man page
dim<-,matter_vec-method Man page
dimnames,matter-method Man page
dimnames2index Source code
dimnames<-,matter,ANY-method Man page
dimnames<-,virtual_tbl,ANY-method Man page
do_matrix_bigglm Source code
do_recursive Source code
drle Man page Source code
drle-class Man page
drop_attr Source code
drop_groups_from_atoms Source code
exp,matter_arr-method Man page
exp,matter_fc-method Man page
exp,matter_mat-method Man page
exp,matter_vec-method Man page
filemode Man page
filemode,matter-method Man page
filemode<- Man page
filemode<-,matter-method Man page
filemode<-,matter_vt-method Man page
fmt_num_bytes Source code
format.num_bytes Source code
formatDRLERuns Source code
getArray Source code
getArrayElements Source code
getChunkStats Source code
getDRLE Source code
getDRLEElements Source code
getDataFrame Source code
getDataFrameCols Source code
getDataFrameElements Source code
getDataFrameRows Source code
getGroupStats Source code
getList Source code
getListElements Source code
getMatrix Source code
getMatrixCols Source code
getMatrixElements Source code
getMatrixRows Source code
getSparseMatrix Source code
getSparseMatrixCols Source code
getSparseMatrixElements Source code
getSparseMatrixRows Source code
getStats Source code
getString Source code
getStringElements Source code
getVector Source code
getVectorElements Source code
getVirtualMatrix Source code
getVirtualMatrixCols Source code
getVirtualMatrixElements Source code
getVirtualMatrixRows Source code
get_nchunks Source code
groupCombiner Source code
groupIds Source code
groupMaxs Source code
groupMeans Source code
groupMins Source code
groupSums Source code
head,virtual_tbl-method Man page
hex2raw Man page Source code
is.drle Man page Source code
is.matter Man page Source code
is.sorted Source code
is.sparse Man page Source code
is.stream_stat Source code
is.virtual Man page Source code
keys Man page
keys,sparse_mat-method Man page
keys<- Man page
keys<-,sparse_mat-method Man page
keys<-,sparse_matc-method Man page
keys<-,sparse_matr-method Man page
lapply Man page
lapply,matter_list-method Man page
lapply,virtual_df-method Man page
leftMatrixMult Source code
length,atoms-method Man page
length,drle-method Man page
length,matter-method Man page
length,rep_vt-method Man page
length<-,matter-method Man page
lengths,matter-method Man page
lengths,matter_list-method Man page
lengths,matter_str-method Man page
levels,matter_fc-method Man page
levels<-,matter_fc-method Man page
linearInd Source code
lm.prof Man page
locmax Man page Source code
log,matter_arr,numeric-method Man page
log,matter_arr-method Man page
log,matter_fc,numeric-method Man page
log,matter_fc-method Man page
log,matter_matc,numeric-method Man page
log,matter_matc-method Man page
log,matter_matr,numeric-method Man page
log,matter_matr-method Man page
log,matter_vec,numeric-method Man page
log,matter_vec-method Man page
log10,matter_arr-method Man page
log10,matter_fc-method Man page
log10,matter_mat-method Man page
log10,matter_vec-method Man page
log2,matter_arr-method Man page
log2,matter_fc-method Man page
log2,matter_mat-method Man page
log2,matter_vec-method Man page
logical2index Source code
make_datamode Man page Source code
make_filemode Man page Source code
make_op Source code
matrixInd Source code
matter Man page Source code
matter-class Man page
matter-datatypes Man page
matter-options Man page
matter-utils Man page
matter_arr Man page Source code
matter_arr-class Man page
matter_df Man page Source code
matter_df-class Man page
matter_ex Man page
matter_fc Man page Source code
matter_fc-class Man page
matter_list Man page Source code
matter_list-class Man page
matter_mat Man page Source code
matter_mat-class Man page
matter_matc Man page
matter_matc-class Man page
matter_matr Man page
matter_matr-class Man page
matter_msi Man page
matter_sim Man page
matter_str Man page Source code
matter_str-class Man page
matter_vec Man page Source code
matter_vec-class Man page
max,matter-method Man page
mean Man page
mean,matter-method Man page
mem Man page Source code
min,matter-method Man page
msi.prof Man page
na_length Source code
na_rm Source code
na_rm.default Source code
names,matter-method Man page
names2index Source code
names<-,matter-method Man page
names<-,virtual_tbl-method Man page
nchunk_list Source code
nchunk_mat Source code
nchunk_vec Source code
nnzero_na_rm Source code
nobs.stream_stat Source code
num_bytes Source code
paste_head Source code
path,matter-method Man page
path<-,matter-method Man page
paths Man page
paths,matter-method Man page
paths<- Man page
paths<-,matter-method Man page
paths<-,matter_vt-method Man page
pca.prof Man page
prcomp Man page
prcomp,matter_mat-method Man page
prcomp.out Man page
prcomp_matter_mat Source code
preview_Nd_array Source code
preview_for_display Man page
preview_for_display,ANY-method Man page
preview_for_display,atoms-method Man page
preview_for_display,drle-method Man page
preview_for_display,matter_arr-method Man page
preview_for_display,matter_df-method Man page
preview_for_display,matter_fc-method Man page
preview_for_display,matter_list-method Man page
preview_for_display,matter_mat-method Man page
preview_for_display,matter_str-method Man page
preview_for_display,matter_vec-method Man page
preview_for_display,rep_vt-method Man page
preview_for_display,sparse_mat-method Man page
preview_for_display,virtual_mat-method Man page
preview_for_display,virtual_tbl-method Man page
preview_list Source code
preview_matrix Source code
preview_matrix_data Source code
preview_table Source code
preview_vector Source code
preview_vector_data Source code
print.stream_stat Source code
prod,matter-method Man page
profmem Man page Source code
pull Man page
push Man page
range,matter-method Man page
raw2char Source code
raw2hex Man page Source code
rbind,matter-method Man page
readonly Man page
readonly,matter-method Man page
readonly<- Man page
readonly<-,matter-method Man page
readonly<-,matter_vt-method Man page
register_op Source code
remote_collect Source code
remote_writer Source code
rep_vt Man page Source code
rep_vt-class Man page
returnWithWarning Source code
rightMatrixMult Source code
rowMajInd Source code
rowMeans,matter_mat-method Man page
rowSds Man page
rowSds,matter_mat-method Man page
rowStats Man page
rowStats,ANY-method Man page
rowStats,matter_matc-method Man page
rowStats,sparse_matc-method Man page
rowStats,virtual_matc-method Man page
rowSums,matter_mat-method Man page
rowVars Man page
rowVars,matter_mat-method Man page
rowstreamStats Man page Source code
s_all Man page Source code
s_any Man page Source code
s_max Man page Source code
s_mean Man page Source code
s_min Man page Source code
s_nnzero Man page Source code
s_prod Man page Source code
s_range Man page Source code
s_sd Man page Source code
s_sum Man page Source code
s_var Man page Source code
sapply Man page
sapply,matter_list-method Man page
sapply,virtual_df-method Man page
scale Man page
scale,matter_mat-method Man page
scale.matter Man page
sd Man page
sd,matter-method Man page
setArray Source code
setArrayElements Source code
setDataFrame Source code
setDataFrameCols Source code
setDataFrameElements Source code
setDataFrameRows Source code
setList Source code
setListElements Source code
setMatrix Source code
setMatrixCols Source code
setMatrixElements Source code
setMatrixRows Source code
setSparseMatrix Source code
setSparseMatrixCols Source code
setSparseMatrixElements Source code
setSparseMatrixRows Source code
setVector Source code
setVectorElements Source code
show_matter_memory_and_storage Source code
sizeof Man page Source code
sparse_mat Man page Source code
sparse_mat-class Man page
sparse_matc Man page
sparse_matc-class Man page
sparse_matr Man page
sparse_matr-class Man page
stat_c Man page Source code
stat_c.default Source code
stat_c.stream_all Source code
stat_c.stream_any Source code
stat_c.stream_max Source code
stat_c.stream_mean Source code
stat_c.stream_min Source code
stat_c.stream_nnzero Source code
stat_c.stream_prod Source code
stat_c.stream_range Source code
stat_c.stream_sd Source code
stat_c.stream_sum Source code
stat_c.stream_var Source code
stream_stat Man page
stream_stat_attr Source code
stream_stat_class Source code
stream_stat_fun Source code
stringsToFactors Source code
struct Man page Source code
subDataFrameCols Source code
subDataFrameElements Source code
subDataFrameRows Source code
subList Source code
subListElementAsVector Source code
subListElements Source code
subMatrix Source code
subMatrixCols Source code
subMatrixRows Source code
subSparseMatrix Source code
subSparseMatrixCols Source code
subSparseMatrixRows Source code
subVector Source code
subVirtualMatrix Source code
subVirtualMatrixCols Source code
subVirtualMatrixRows Source code
subset_atoms_by_index_offset Source code
sum,matter-method Man page
t,matter_matc-method Man page
t,matter_matr-method Man page
t,matter_vec-method Man page
t,sparse_matc-method Man page
t,sparse_matr-method Man page
t,virtual_mat-method Man page
t.matter Man page
tail,virtual_tbl-method Man page
tcrossprod,ANY,matter-method Man page
tcrossprod,matter,ANY-method Man page
tolerance Man page
tolerance,sparse_mat-method Man page
tolerance<- Man page
tolerance<-,sparse_mat-method Man page
transformChunk Source code
uuid Man page Source code
var Man page
var,matter-method Man page
virtual_df Man page Source code
virtual_df-class Man page
virtual_df_chunker Source code
virtual_mat Man page Source code
virtual_mat-class Man page
virtual_mat_chunker Source code
virtual_matc Man page
virtual_matc-class Man page
virtual_matr Man page
virtual_matr-class Man page
virtual_tbl-class Man page
vm_used Man page Source code
which,matter-method Man page
widest_datamode Man page Source code
matter documentation built on Nov. 8, 2020, 6:15 p.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close