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This package produces metagene plots to compare the behavior of DNA-interacting proteins at selected groups of genes/features. Bam files are used to increase the resolution. Multiple combination of group of bam files and/or group of genomic regions can be compared in a single analysis. Bootstraping analysis is used to compare the groups and locate regions with statistically different enrichment profiles.
Package details |
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Author | Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>, Fabien Claude Lamaze <fabien.lamaze.1@ulaval.ca>, Rawane Samb <rawane.samb.1@ulaval.ca>, Cedric Lippens <lippens.cedric@protonmail>, Astrid Louise Deschenes <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca> and Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>. |
Bioconductor views | Alignment ChIPSeq Coverage Genetics MultipleComparison Sequencing |
Maintainer | Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca> |
License | Artistic-2.0 | file LICENSE |
Version | 2.22.0 |
Package repository | View on Bioconductor |
Installation |
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