API for r3Cseq
Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Global functions
Myb_prom_FB Man page
Myb_prom_FL Man page
assign3CseqSigContact Source code
calculateBatchRPM Man page
calculateBatchRPM,r3CseqInBatch-method Man page
calculateRPM Man page
calculateRPM,r3Cseq-method Man page
contrCoverage Man page
contrCoverage,r3Cseq-method Man page
contrInteractionRegions Man page
contrInteractionRegions,r3CseqCommon-method Man page
contrRPM Man page
contrRPM,r3CseqCommon-method Man page
contrRawData Man page
contrRawData,r3Cseq-method Man page
contrRawData<- Man page
contrRawData<-,r3Cseq-method Man page
contrReadCount Man page
contrReadCount,r3CseqCommon-method Man page
enzymeDb Man page
excludeReadsNearViewpoint Source code
expCoverage Man page
expCoverage,r3Cseq-method Man page
expInteractionRegions Man page
expInteractionRegions,r3CseqCommon-method Man page
expRPM Man page
expRPM,r3CseqCommon-method Man page
expRawData Man page
expRawData,r3Cseq-method Man page
expRawData<- Man page
expRawData<-,r3Cseq-method Man page
expReadCount Man page
expReadCount,r3CseqCommon-method Man page
export3Cseq2bedGraph Man page
export3Cseq2bedGraph,r3Cseq-method Man page
export3CseqRawReads2bedGraph Man page
export3CseqRawReads2bedGraph,r3Cseq-method Man page
exportBatchInteractions2text Man page
exportBatchInteractions2text,r3CseqInBatch-method Man page
exportInteractions2text Man page
exportInteractions2text,r3Cseq-method Man page
fishersMethod Source code
generate3CseqReport Man page Source code
generate3CseqReport,r3Cseq-method Man page
generate3CseqReport,r3CseqInBatch-method Man page
get3CseqRefGene Source code
getBatchInteractions Man page
getBatchInteractions,r3CseqInBatch-method Man page
getBatchRawReads Man page
getBatchRawReads,r3CseqInBatch-method Man page
getBatchReadCountPerRestrictionFragment Man page
getBatchReadCountPerRestrictionFragment,r3CseqInBatch-method Man page
getBatchReadCountPerWindow Man page
getBatchReadCountPerWindow,r3CseqInBatch-method Man page
getContrInteractionsInRefseq Man page Source code
getContrInteractionsInRefseq,r3Cseq-method Man page
getCoverage Man page
getCoverage,r3Cseq-method Man page
getExpInteractionsInRefseq Man page Source code
getExpInteractionsInRefseq,r3Cseq-method Man page
getFragmentsPerWindow Source code
getInteractions Man page
getInteractions,r3Cseq-method Man page
getPowerLawFittedCoeficient Source code
getRawReads Man page
getRawReads,r3Cseq-method Man page
getReadCountPerRestrictionFragment Man page
getReadCountPerRestrictionFragment,r3Cseq-method Man page
getReadCountPerWindow Man page
getReadCountPerWindow,r3Cseq-method Man page
getViewpoint Man page Source code
getViewpoint,r3Cseq-method Man page
hg18refGene Man page
hg19refGene Man page
makeInteractionMatrixNearCisPerWindow Source code
mm10refGene Man page
mm9refGene Man page
normalcalRPM Source code
plot3Cecdf Man page
plot3Cecdf,r3Cseq-method Man page
plotDomainogramNearViewpoint Man page
plotDomainogramNearViewpoint,r3Cseq-method Man page
plotInteractionsNearViewpoint Man page Source code
plotInteractionsNearViewpoint,r3Cseq-method Man page
plotInteractionsPerChromosome Man page Source code
plotInteractionsPerChromosome,r3Cseq-method Man page
plotOverviewInteractions Man page Source code
plotOverviewInteractions,r3Cseq-method Man page
powerLawFittedRPM Source code
r3Cseq Man page
r3Cseq-class Man page
r3CseqCommon Man page
r3CseqCommon-class Man page
r3CseqInBatch Man page
r3CseqInBatch-class Man page
rn5refGene Man page
r3Cseq documentation built on Nov. 17, 2017, 10:12 a.m.