Description Usage Arguments Value Author(s) See Also Examples

Calculate z-score, assign p-value and q-value to each interaction regions for replicates data sets

1 | ```
getBatchInteractions(object,method=c("union","intersection"),smoothing.parameter=0.1,fdr=0.05)
``` |

`object` |
r3Cseq object |

`method` |
character. The method for combining biological replicates for 3C-Seq analysis (default = "union") |

`smoothing.parameter` |
A level at which cubic smoothing spline for the spar (see vsmooth.spline) input parameter. Must be in (0.06,0.4] (default=0.1) |

`fdr` |
A level at which to control the FDR. Must be in (0,1] (default=0.05) |

The interaction regions show in the RangedData

S. Thongjuea

getInteractions vsmooth.spline

1 | ```
#See the vignette
``` |

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