calculateBatchRPM: calculate read per million (RPM) for replicates analysis
In r3Cseq: Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
Description
Usage
Arguments
Author(s)
See Also
Examples
Description
Normalize 3C-Seq data by transforming raw reads to read per million per each region for replication analysis
Usage
1
calculateBatchRPM(object,normalized_method=c("powerlawFittedRPM","normalRPM"))
Arguments
object
r3CseqInBatch object
normalized_method
character. method of normalization (default=powerlawFittedRPM)
Author(s)
S. Thongjuea
See Also
calculateRPM,
expRPM
contrRPM
Examples
1
#See the vignette
r3Cseq documentation built on Nov. 8, 2020, 6:26 p.m.
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Description Usage Arguments Author(s) See Also Examples
Description
Normalize 3C-Seq data by transforming raw reads to read per million per each region for replication analysis
Usage
1 | calculateBatchRPM(object,normalized_method=c("powerlawFittedRPM","normalRPM"))
|
Arguments
object |
r3CseqInBatch object |
normalized_method |
character. method of normalization (default=powerlawFittedRPM) |
Author(s)
S. Thongjuea
See Also
calculateRPM, expRPM contrRPM
Examples
1 | #See the vignette
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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