export3Cseq2bedGraph: export interaction regions to the 'bedGraph' format
In r3Cseq: Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
export interaction regions from RagedData to the bedGraph format, which
suitable for uploading to the UCSC genome browser
Usage
1
export3Cseq2bedGraph(object,datatype=c("rpm","read_count"))
Arguments
object
r3Cseq object, The object might contain the interaction regions generated by function getInteractions
datatype
read_count : read count per restriction fragment
rpm : normalized read per million per restriction fragment
Value
The text file in 'bedGraph' format
Author(s)
S. Thongjuea
See Also
exportInteractions2text
Examples
1
#See the vignette
r3Cseq documentation built on Nov. 8, 2020, 6:26 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
export interaction regions from RagedData to the bedGraph format, which suitable for uploading to the UCSC genome browser
Usage
1 | export3Cseq2bedGraph(object,datatype=c("rpm","read_count"))
|
Arguments
object |
r3Cseq object, The object might contain the interaction regions generated by function getInteractions |
datatype |
read_count : read count per restriction fragment rpm : normalized read per million per restriction fragment |
Value
The text file in 'bedGraph' format
Author(s)
S. Thongjuea
See Also
exportInteractions2text
Examples
1 | #See the vignette
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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