Files in r3Cseq
Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/Myb_prom_FB.rdata
data/hg18refGene.rdata
data/Myb_prom_FL.rdata
data/enzymeDb.rda
data/datalist
data/mm10refGene.rdata
data/example.data.rda
data/hg19refGene.rdata
data/mm9refGene.rdata
data/rn5refGene.rdata
R/Report.R
R/Annotation.R
R/AllGenerics.R
R/FunctionInCommon.R
R/FunctionsForNoReplicationAnalysis.R
R/FunctionsForBatchAnalysis.R
R/AllClasses.R
R/Export.R
R/Visualize3Cseq.R
R/RestrictionEnzymeFunctions.R
vignettes/r3Cseq.Rmd
vignettes/r3Cseq.html
vignettes/r3Cseq.bib
vignettes/r3Cseq.Rnw
vignettes/images/r3CseqFlowChart.png
vignettes/images/3CseqProcedures.png
man/getBatchReadCountPerRestrictionFragment.Rd
man/calculateBatchRPM.Rd
man/generate3CseqReport.Rd
man/calculateRPM.Rd
man/expReadCount.Rd
man/plotDomainogramNearViewpoint.Rd
man/getRawReads.Rd
man/contrRawData.Rd
man/r3CseqInBatch-class.Rd
man/getExpInteractionsInRefseq.Rd
man/contrReadCount.Rd
man/rn5refGene.Rd
man/contrCoverage.Rd
man/enzymeDb.Rd
man/export3Cseq2bedGraph.Rd
man/hg19refGene.Rd
man/getBatchInteractions.Rd
man/getBatchReadCountPerWindow.Rd
man/exportInteractions2text.Rd
man/r3Cseq-class.Rd
man/contrRPM.Rd
man/getInteractions.Rd
man/Myb_prom_FB.Rd
man/mm10refGene.Rd
man/export3CseqRawReads2bedGraph.Rd
man/contrInteractionRegions.Rd
man/expCoverage.Rd
man/mm9refGene.Rd
man/getContrInteractionsInRefseq.Rd
man/getReadCountPerWindow.Rd
man/plotInteractionsNearViewpoint.Rd
man/expRawData.Rd
man/getBatchRawReads.Rd
man/hg18refGene.Rd
man/Myb_prom_FL.Rd
man/plotInteractionsPerChromosome.Rd
man/expRPM.Rd
man/plot3Cecdf.Rd
man/plotOverviewInteractions.Rd
man/r3CseqCommon-class.Rd
man/getViewpoint.Rd
man/expInteractionRegions.Rd
man/getReadCountPerRestrictionFragment.Rd
man/exportBatchInteractions2text.Rd
man/getCoverage.Rd
inst/doc/r3Cseq.pdf
inst/doc/r3Cseq.R
inst/doc/r3Cseq.Rnw
