plotInteractionsNearViewpoint: Plot identified interaction regions near the viewpoint

In r3Cseq: Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Description

Plot identified interaction regions near the viewpoint

Usage

plotInteractionsNearViewpoint(obj,distance=5e5,log2fc_cutoff=1,yLim=0)

Arguments

obj	obj is r3Cseq or r3CseqInBatch object
distance	Numeric. The distance relative to the viewpoint (default=5e5)
log2fc_cutoff	Numeric. The log2 cutoff ratio between the experiment and control (default=1)
yLim	Numeric. The limited height of y-axis (default=0)

Value

Plots of identified interaction regions close to the viewpoint

Author(s)

S. Thongjuea

See Also

plotOverviewInteractions, plotInteractionsPerChromosome, plotDomainogramNearViewpoint

Examples

	# See the vignette

r3Cseq documentation built on Nov. 8, 2020, 6:26 p.m.