getBatchReadCountPerWindow: count reads per window size for replicates analysis

Description Usage Arguments Value Author(s) See Also Examples

Description

Counts the number of reads from 3C-Seq data per each window size for replicates analysis

Usage

1
getBatchReadCountPerWindow(object,windowSize=5e3,nFragmentExcludedReadsNearViewpoint=2,mode=c("non-overlapping", "overlapping"))

Arguments

object

r3CseqInBatch object

windowSize

Numeric. non-overlapping window size for counting reads (default=5e3)

nFragmentExcludedReadsNearViewpoint

Numeric. The number of excluded fragments around the viewpoint, reads found in these fragments will be removed from the analysis (default=2)

mode

character. The window-based modes analysis (default="non-overlapping")

Value

The RangedData represents the number of reads per each window size

Author(s)

S. Thongjuea

See Also

getReadCountPerRestrictionFragment, getBatchReadCountPerRestrictionFragment, getReadCountPerWindow,

Examples

1
  #See the vignette	

r3Cseq documentation built on Nov. 8, 2020, 6:26 p.m.