SpeciesReferenceGlyph-class: SBML type "SpeciesReferenceGlyph"

In rsbml: R support for SBML, using libsbml

Description

A glyph representing a SpeciesReference in an SBML layout.

Instantiation

Objects can be created by calls of the form new("SpeciesReferenceGlyph", ...).

Slots

speciesGlyph:

Object of class "character" identifying the SpeciesGlyph representing the Species that is referenced by the underyling SpeciesReference.

speciesReference:

Object of class "character" identifying the linkS4class{SpeciesReference} represented by this glyph.

role:

Object of class "character" indicating how this glyph should represent the "role" of the underlying SpeciesReference.

glyphCurve:

Object of class "Curve" describing this glyph as a curve (optional).

id:

Object of class "character" uniquely identifying this component.

boundingBox:

Object of class "BoundingBox" describing the position and size of the graphical object.

metaId:

Object of class "character" that is an XML ID "described" by an RDF resource. This links an SBML element to an RDF resource. RDF may appear anywhere in an SBML element, but is usually placed inside the annotation element.

notes:

Object of class "character" containing user-readable XHTML notes about an element.

annotation:

Object of class "character" containing additional machine-readable information about an element, usually as RDF, such as BioPAX. This is where application-specific data belongs.

cvTerms:

Object of class "list" containing instances of CVTerm associated with this element.

sboTerm:

Object of class "integer" identifying a term in the Systems Biology Ontology (SBO).

Extends

Class "GraphicalObject", directly. Class "SBase", by class "GraphicalObject", distance 2.

Methods

role

signature(object = "SpeciesReferenceGlyph"): gets the role slot

role<-

signature(object = "SpeciesReferenceGlyph"): sets the role slot

speciesGlyph

signature(object = "SpeciesReferenceGlyph"): gets the speciesGlyph slot

speciesGlyph<-

signature(object = "SpeciesReferenceGlyph"): sets the speciesGlyph slot

speciesReference

signature(object = "SpeciesReferenceGlyph"): gets the speciesReference slot

speciesReference<-

signature(object = "SpeciesReferenceGlyph"): sets the speciesReference slot

glyphCurve

signature(expr = "SpeciesReferenceGlyph"): gets the glyphCurve slot

glyphCurve<-

signature(object = "SpeciesReferenceGlyph"): sets the glyphCurve slot

Author(s)

Michael Lawrence

References

http://projects.villa-bosch.de/bcb/sbml

rsbml documentation built on Nov. 8, 2020, 8:09 p.m.