SpeciesType-class: SBML Type "SpeciesType"

In rsbml: R support for SBML, using libsbml

Description

A Species represents a pool of a chemical in a particular linkS4class{Compartment}. This element specifies a type of species, that is, the chemical independent of location.

Objects from the Class

Objects can be created by calls of the form new("SpeciesType", ...).

Slots

id:

Object of class "character" uniquely identifying this component.

name:

Object of class "character" naming this component.

metaId:

Object of class "character" that is an XML ID "described" by an RDF resource. This links an SBML element to an RDF resource. RDF may appear anywhere in an SBML element, but is usually placed inside the annotation element.

notes:

Object of class "character" containing user-readable XHTML notes about an element.

annotation:

Object of class "character" containing additional machine-readable information about an element, usually as RDF, such as BioPAX. This is where application-specific data belongs.

cvTerms:

Object of class "list" containing instances of CVTerm associated with this element.

sboTerm:

Object of class "integer" identifying a term in the Systems Biology Ontology (SBO).

Extends

Class "SBase", directly.

Methods

id

signature(object = "SpeciesType"): gets the id slot

id<-

signature(object = "SpeciesType"): sets the id slot

name

signature(object = "SpeciesType"): gets the name slot

name<-

signature(object = "SpeciesType"): sets the name slot

Note

Requires libsbml >= 3.0

Author(s)

Michael Lawrence

References

http://sbml.org/documents/

See Also

Species

rsbml documentation built on Nov. 8, 2020, 8:09 p.m.