all.present.in.group: Filter by PMA call

In simpleaffy: Very simple high level analysis of Affymetrix data

Description

Filters an object by PMA calls. Must be called present in at leset 'no' elements in at least one of the replicate sets in the factor 'group'

Usage

  ## S3 method for class 'present.in.group'
all(x,group,members,calls,no = "all")

Arguments

x	An object to filter
group	The factor to filter by
members	The members in the group to check. If null, checks all possible ones
calls	A matrix of PMA calls
no	How many in a row to pass the filter? If 'all' then all must be present

Value

A probesetid

Author(s)

Crispin J Miller

Examples

  ## Not run: 
     all.present.in.group(eset,calls,"line",dim(calls)[2])
  
## End(Not run)

simpleaffy documentation built on Nov. 8, 2020, 11:09 p.m.