qc.read.file: Read a file defining the QC parameters for a specified array...
In simpleaffy: Very simple high level analysis of Affymetrix data
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
Description
Affymetrix define a series of QC parameters for their arrays. Many of
these rely on specific probeset that differ between arrays and are
used to calculate things like 3'/5' ratios. See qc.affy
for more details. This is usually done by a call to
setQCEnvironment; the function described here is the one
that does the actual loading of the
configuration file. See the package vignette for details of the config
file's syntax.
Usage
1
qc.read.file(fn)
Arguments
fn
full path and name of the file to load
Value
none.
Author(s)
Crispin J Miller
References
http://bioinformatics.picr.man.ac.uk/
See Also
Examples
1
2
3
4
5
fn <- system.file("extdata","hgu133plus2cdf.qcdef",package="simpleaffy")
qc.read.file(fn)
qc.get.spikes()
qc.get.probes()
qc.get.ratios()
simpleaffy documentation built on Nov. 8, 2020, 11:09 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) References See Also Examples
Description
Affymetrix define a series of QC parameters for their arrays. Many of
these rely on specific probeset that differ between arrays and are
used to calculate things like 3'/5' ratios. See qc.affy
for more details. This is usually done by a call to
setQCEnvironment; the function described here is the one
that does the actual loading of the
configuration file. See the package vignette for details of the config
file's syntax.
Usage
1 | qc.read.file(fn)
|
Arguments
fn |
full path and name of the file to load |
Value
none.
Author(s)
Crispin J Miller
References
http://bioinformatics.picr.man.ac.uk/
See Also
Examples
1 2 3 4 5 | fn <- system.file("extdata","hgu133plus2cdf.qcdef",package="simpleaffy")
qc.read.file(fn)
qc.get.spikes()
qc.get.probes()
qc.get.ratios()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.