qc.have.params: Does simpleaffy have a QC definition file for the specified...

In simpleaffy: Very simple high level analysis of Affymetrix data

Description

Simpleaffy requires a definition file describing the qc probes, spikes, alpha values, etc. for the array of interest. This is used to initialize the QC environment for the array (usually implicitly within the qc function), by a call to setQCEnvironment. This function can be used to see if the specified array has a definition file.

Usage

  qc.have.params(name)

Arguments

name	The 'clean' CDF name of the array (i.e. the result of calling cleancdfname on the cdfName of the AffyBatch object containing the array data of interest.

Value

True or False

Author(s)

Crispin J Miller

References

http://bioinformatics.picr.man.ac.uk/

See Also

setQCEnvironment, qc, qc.ok, cdfName, cleancdfname

Examples

  qc.have.params("nosucharraycdf")
  qc.have.params("hgu133plus2cdf")
  setQCEnvironment("hgu133plus2cdf")
  qc.have.params(cleancdfname("HG-U133_Plus_2"))

simpleaffy documentation built on Nov. 8, 2020, 11:09 p.m.