qc.get.spikes: Retrieve QC spike probeset names for the current array type

In simpleaffy: Very simple high level analysis of Affymetrix data

Description

Get the names of spike probesets for bioB, bioC, etc. ratios for the current array type. qc.get.probes is used to define the 3'/5' ratio probesets

Usage

 qc.get.spikes()
 qc.get.spike(name)
 qc.add.spike(name,probeset)

Arguments

name	A name for the given probeset. By default, this is the probeset identifier
probeset	A probeset ID

Value

A character array of probeset IDs, or the requested probeset ID, as appropriate.

Author(s)

Crispin J Miller

References

http://bioinformatics.picr.man.ac.uk/

See Also

setQCEnvironment qc.get.probes

Examples

  qc.get.spikes()
  qc.add.spike("my.name","a.probesetid_at")
  qc.add.spike("another.name","another.probesetid_at")
  qc.get.spikes()

simpleaffy documentation built on Nov. 8, 2020, 11:09 p.m.