qc.get.ratios: Retrieve pairs of probesets used for calculating 3'/5' ratios

In simpleaffy: Very simple high level analysis of Affymetrix data

Description

Get the names of the qc probesets used to define the 3'/5' ratios.

Usage

 qc.get.ratios()
 qc.get.ratio(name)
 qc.add.ratio(name,probeset1,probeset2)

Arguments

name	A name for the given ratio calculation (such as gapdh3/5)
probeset1	A probeset ID
probeset2	A probeset ID

Value

A list, each element with a name like gapdh3/5 and comprising of a two-element character vector of probeset IDs.

Author(s)

Crispin J Miller

References

http://bioinformatics.picr.man.ac.uk/

See Also

setQCEnvironment qc.get.probes

Examples

  setQCEnvironment("hgu133plus2cdf")
  qc.get.ratios()
  qc.add.ratio("a.name","probeset1.id","probeset2.id")
  qc.get.ratio("a.name")

simpleaffy documentation built on Nov. 8, 2020, 11:09 p.m.