bg.correct.sa: Simpleaffy Implementation of Mas5 Background Correction

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/justMAS.R

Description

Implements the MAS5.0 background correction functions as described in Affy's 'Statistical Algorithms Description Document'.

Usage

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  bg.correct.sa(unnormalised,grid=c(4,4))

Arguments

unnormalised

An unnormalised AffyBatch object

grid

The dimensions of the grid to divide the chip into for background correction.

Value

An AffyBatch object

Author(s)

Crispin J Miller

References

http://bioinformatics.picr.man.ac.uk/ http://www.affymetrix.com/support/technical/technotes/statistical_reference_guide.pdf

See Also

http://www.affymetrix.com/support/technical/technotes/statistical_reference_guide.pdf

Examples

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   ## Not run: 
     eset.bg.mas <- bg.correct.sa(eset);   
   
## End(Not run)

simpleaffy documentation built on May 2, 2018, 4:16 a.m.