convertSCEToSeurat: convertSCEToSeurat Converts sce object to seurat while...

In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Description

convertSCEToSeurat Converts sce object to seurat while retaining all assays and metadata

Usage

convertSCEToSeurat(
  inSCE,
  countsAssay = NULL,
  normAssay = NULL,
  scaledAssay = NULL
)

Arguments

inSCE	A SingleCellExperiment object to convert to a Seurat object.
countsAssay	Which assay to use from sce object for raw counts. Default NULL.
normAssay	Which assay to use from sce object for normalized data. Default NULL.
scaledAssay	Which assay to use from sce object for scaled data. Default NULL

Value

Updated seurat object that contains all data from the input sce object

Examples

data(scExample, package = "singleCellTK")
seurat <- convertSCEToSeurat(sce)

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.