dot-ggDensity: Density plot plotting tool.

In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Description

Visualizes values stored in the specified slot of a SingleCellExperiment object via a density plot.

Usage

.ggDensity(
  value,
  groupBy = NULL,
  xlab = NULL,
  ylab = NULL,
  axisSize = 10,
  axisLabelSize = 10,
  defaultTheme = TRUE,
  title = NULL,
  titleSize = 18,
  cutoff = NULL
)

Arguments

value	Numeric value that will be plotted via density plot.
groupBy	Groupings for each numeric value. A user may input a vector equal length to the number of the samples in the SingleCellExperiment object, or can be retrieved from the colData slot. Default NULL.
xlab	Character vector. Label for x-axis. Default NULL.
ylab	Character vector. Label for y-axis. Default NULL.
axisSize	Size of x/y-axis ticks. Default 10.
axisLabelSize	Size of x/y-axis labels. Default 10.
defaultTheme	Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE.
title	Title of plot. Default NULL.
titleSize	Size of title of plot. Default 15.
cutoff	Numeric value. The plot will be annotated with a vertical line if set. Default NULL.

Value

density plot, in .ggplot.

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.